[Biojava-dev] some code I've knocked up

[Matthew Pocock]

Hi,

For my sins (which I guess must be many and varied), I've been working 
with some expression data the last week. There isn't anything in biojava 
that helps out here. I had to write code to parse files with tables 
(e.g. tab delimited text files) and to manipulate trees.

The javadoc (undocumented) is up at http://www-ihg.ncl.ac.uk/mopo

I'd apreciate any comments anyone has about it. I think Table needs to 
be extended to include both row and column titles. Some of the method 
names suck. The cluster algorithms need testing on some 3rd party data 
to make sure they do what they are meant to do.

Perhaps after a good dusting down, some of this could make its way into 
biojava.

Matthew