[Biojava-dev] Contributing chromatogram support to BioJava
Schreiber, Mark
mark.schreiber at agresearch.co.nz
Wed Mar 12 13:38:59 EST 2003
Hi -
The ABITraceRenderer is found at
org.biojava.bio.gui.sequence.AbiTraceRenderer. It follows the biojava
gui idea of a SequenceRenderer. Hopefully if the ChromatogramGraphic can
be worked into a SequenceRenderer somehow then AbiTraceRender can be
deprecated and replaced with something more generic.
- Mark
> -----Original Message-----
> From: Rhett Sutphin [mailto:rhett-sutphin at uiowa.edu]
> Sent: Wednesday, 12 March 2003 1:37 p.m.
> To: Schreiber, Mark; biojava-dev at biojava.org
> Subject: Re: [Biojava-dev] Contributing chromatogram support
> to BioJava
>
>
> Schreiber, Mark wrote:
> > Is there a plan to update the ABITraceViewer to work with the new
> > Chromatogram API? It would be cool if it could work with
> all supported
> > Chromatograms.
>
> I don't know what ABITraceViewer is, so I can't respond about it
> specifically. But the code I'm contributing includes a class called
> ChromatogramGraphic that knows how to draw a Chromatogram onto a
> Graphics2D object.
>
> It is optimized (somewhat) to only draw the portion of the
> Chroamtogram
> that falls into the clipping rectangle of the graphics
> context, so it is
> suitable for use in interactive applications.
>
> Rhett
>
>
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