[Biojava-dev] Participation

[Schreiber, Mark]

Hi -

Biojava has some limited proteomics classes (org.biojava.bio.proteomics) but more would be good. Also some micro-array analsysis / parsing tools would be very useful and we don't have any right now although there are some bare bones of a mage lite api at http://cvs.biojava.org/cgi-bin/viewcvs/viewcvs.cgi/biojava-exptl/src/org/biojava/bio/expression/magelite/?cvsroot=biojava which michael heuer coded up. I'm not sure of the status of these though.

If you can see an opportunity for some of your code to be integrated I think we would be keen.

Generally we try and design by interface to give room for multiple implementations and it would be nice if anything you submit has javadocs and preferably unit tests and really great if you could provide a demo!

- Mark


> -----Original Message-----
> From: Dennis, Glynn (NIH/NIAID) [mailto:GDennis at niaid.nih.gov] 
> Sent: Tuesday, 2 December 2003 11:45 a.m.
> To: 'biojava-dev at biojava.org'
> Subject: [Biojava-dev] Participation
> 
> 
> I would like to discuss with you how we might be able to 
> contribute to BioJava.  We develop applications (in java) 
> that facilitate the biological interpretation of functional 
> genomic data sets, such as those derived from microarrays and 
> proteomics.  We have several parsers and analysis modules 
> that we would consider including in BioJava as part of a 
> larger goal of open source code for dealing with functional 
> genomic data analysis.
> 
> Please let me know your level of interest and advise towards 
> a next step.
> 
> Best,
> 
> Glynn Dennis Jr., Ph.D.
> LIB/CSP/NIAID
> SAIC-Frederick, Inc.
> NCI-FCRDC P.O. Box B
> Frederick, MD 21702-1201
> Wk: 301-846-7114; 301-846-1910
> Hm: 301-964-2638
> web: www.DAVID.niaid.nih.gov
> 
> _______________________________________________
> biojava-dev mailing list
> biojava-dev at biojava.org 
> http://biojava.org/mailman/listinfo/biojava-> dev
> 
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