[Biojava-dev] Tests failing

[Thomas Down]

There have been a few tests failing in the last couple of days:

  * org.biojava.bio.symbol.UkkonenSuffixTreeTest

   There were a couple of problems with this class:

   - The alphabet-copying code in TerminatedSymbolList was
     badly wrong, and was trying to create a new alphabet
     with non-atomic symbols in.  Probably another sign that
     we need more documentation on alphabet-creation.  This
     is fixed now (but not very beautifully).  Is
     TerminatedSymbolList actually needed?

   - SuffixNode.hasChild was broken.

  * org.biojava.bio.symbol.AlphabetSerializationTest

     This was just a problem in the test case, fixed now.


Thomas.