[Biojava-dev] Error trying to write a sequence in memory to system.out in FASTA format

[Carlisia P. Campos]

Hello there,

I am trying to write a sequence in memory to system.out in FASTA format 
and I get the exception below. If anyone has a work around pls let me 
know.

Thank you,
--Carlisia

     try{
       Sequence seq = DNATools.createDNASequence("atggct", "seq");
       SeqIOTools.writeFasta(System.out, seq);        <--- breaking here
     }
     catch (IOException ioe)
     {
       ioe.printStackTrace();
     }
     catch (IllegalSymbolException ex) {
       //this will happen if you try and make the DNA seq using non IUB 
symbols
       ex.printStackTrace();
     }


Exception in thread "main" java.lang.NoClassDefFoundError: 
org/apache/regexp/RESyntaxException
	at 
com.carlisia.ws.bio.TranscribeDNAtoRNA.main(TranscribeDNAtoRNA.java:74)
Process exited with exit code 1.