[Biojava-dev] MappedDataStoreFactory bug

[Schreiber, Mark]

Hi -
 
When trying to increase the wordLength argument of  MappedDataStoreFactory.buildDataStore() above 10 I get an index out of bounds exception
 
Exception in thread "main" java.lang.IndexOutOfBoundsException
        at java.nio.Buffer.checkIndex(Buffer.java:438)
        at java.nio.ByteBufferAsIntBufferB.get(ByteBufferAsIntBufferB.java:96)
        at org.biojava.bio.program.ssaha.MappedDataStoreFactory.addCount(MappedDataStoreFactory.java:305)
        at org.biojava.bio.program.ssaha.MappedDataStoreFactory.buildDataStore(MappedDataStoreFactory.java:143)
        at ssaha.CreateDNAFastaHashTable.main(CreateDNAFastaHashTable.java:31)
 
I think this might be caused by an innapropriate value for "word" created by this statement on line 141
 
int word = PackingFactory.primeWord(seq, wordLength, packing);
 
Can anyone help?
 
- Mark

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