[Biojava-dev] Blast interface

[Patrick McConnell]

In the web services module, I have written code to do this.  On the public
CVS, under the webservices module see:

      /src/org/biojava/webservices/blast/BlastProgramParameters.java
      /src/org/biojava/webservices/blast/service/BlastWebServiceImpl.java
      /src/org/biojava/webservices/blast/client/BlastWebServiceClient.java

This provides code for parsing blast command-line parameters and spawning
blast jobs.

The web services module is just experimental at this point, and it is not
part of the BioJava distribution.  However, it should give you a starting
point.

I hope this helps,

-Patrick






Hangjiong Chen <hjchen1@yahoo.com>@biojava.org on 09/23/2002 08:38:25 AM

Sent by:    biojava-dev-admin@biojava.org


To:    biojava-dev@biojava.org
cc:

Subject:    [Biojava-dev] Blast interface


Hi, could you tell me whether Biojava contains a
package that will allow a JAVA program to pass
commands to a standalone BLAST search engine for
routine blast search processes in the Windows
environment? Could you provide any technique
suggestions how to accomplish this?  I need the BLAST
search for my JAVA application.  Thanks a lot for your
time.

Sincerely.


Hangjiong Chen,

ReceptorBase, Inc.

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