FW: [Biojava-dev] JavaDoc API

[Ren, Zhen]

More silly questions!  Here is the hierarchy for class SimpleAlphabet:

org.biojava.bio.symbol 
Class SimpleAlphabet

java.lang.Object
  |
  +-org.biojava.utils.AbstractChangeable
        |
        +-org.biojava.bio.symbol.AbstractAlphabet
              |
              +-org.biojava.bio.symbol.SimpleAlphabet

All Implemented Interfaces: 
Alphabet, Annotatable, Changeable, FiniteAlphabet, java.io.Serializable

Here, the interface Alphabet is listed in the "All Implemented Interfaces:" section.  When you go to javadoc for Interface Alphabet as listed here:

org.biojava.bio.symbol 
Interface Alphabet

All Superinterfaces: 
Annotatable, Changeable 

All Known Subinterfaces: 
FiniteAlphabet 

All Known Implementing Classes: 
AbstractAlphabet, DoubleAlphabet, IntegerAlphabet, SingletonAlphabet

you don't see class SimpleAlphabet in the "All Known Implementing Classes:" section.  That's the place I got confused.  Thanks.

Zhen

-----Original Message-----
From: Ren, Zhen 
Sent: Tuesday, October 29, 2002 3:20 PM
To: biojava-dev@biojava.org
Subject: FW: [Biojava-dev] JavaDoc API


Sorry to post this again.  Something was missing in the previous one.


Thank you for the reponse.  The following shows the hierachy of class SimpleAtomicSymbol:

org.biojava.bio.symbol 
Class SimpleAtomicSymbol

java.lang.Object
  |
  +-org.biojava.utils.AbstractChangeable
        |
        +-org.biojava.bio.symbol.AbstractSymbol
              |
              +-org.biojava.bio.symbol.SimpleSymbol
                    |
                    +-org.biojava.bio.symbol.SimpleBasisSymbol
                          |
                          +-org.biojava.bio.symbol.SimpleAtomicSymbol

I wonder where the javadocs for classes SimpleSymbol and SimpleBasicSymbol are in either CVS or jar release.  Thank you.

Zhen

-----Original Message-----
From: Schreiber, Mark [mailto:mark.schreiber@agresearch.co.nz]
Sent: Tuesday, October 29, 2002 2:27 PM
To: Ren, Zhen; biojava-dev@biojava.org
Subject: RE: [Biojava-dev] JavaDoc API


Unfortunately they are not currently up to date, the docs built by ant
from the CVS are up to date and the docs available at the download site
are upto date with the distribution releases they match.

Thomas: Is someone updating the website or is that on the wishlist?

- Mark

> -----Original Message-----
> From: Ren, Zhen [mailto:zren@amylin.com] 
> Sent: Wednesday, 30 October 2002 11:16 a.m.
> To: biojava-dev@biojava.org
> Subject: [Biojava-dev] JavaDoc API
> 
> 
> Hi, gang,
> 
> I wonder if the JavaDoc API documentations at 
> http://www.biojava.org/docs/api/ are complete and up-to-date. 
>  If not, how much work is going to be?  That would be 
> extremely helpful to new BioJava people like me to use them.  
> Thanks so much.
> 
> Zhen
> _______________________________________________
> biojava-dev mailing list
> biojava-dev@biojava.org 
> http://biojava.org/mailman/listinfo/biojava-dev
> 
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