[Biojava-dev] blast parsing

[Simon Brocklehurst]

Matthew Pocock wrote:
> 
> Hi,
> 
> Is the NCBI's megablast format that you get from using
> the NCBI's web form text output supported by our blast
> parser? It seems to barf for me:
> 
> Exception in thread "main" org.xml.sax.SAXException:
> Failed to parse query sequence ID
>         at
> org.biojava.bio.program.ssbind.HeaderStAXHandler$BlastDBQueryStAXHandler.setStringValue(HeaderStAXHandler.java:138)
> ...
> 

Not that I'm *aware* of. If the megablast format is the close to regular
pairwise output e.g. the header section is a bit different, I don't
expect it would too hard to add support for someone who was feeling
enthusiastic ;-)

Simon 
--
Dr Simon M. Brocklehurst, Ph.D.
Director of Informatics & Robotics

Cambridge Antibody Technology
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