[Biojava-dev] (no subject)

[Thomas Down]

Actually, there are some suitable pre-written classes already.
If you look in the `tests' tree of the source distribution, you'll
find DummySequenceDB and DummySequenceDBInstallation, which do
the job okay.

I was actually using these on Friday, and thought at the time
that they probably ought to be moved into the main tree, in the
absense of any easier way to get the blast/ssbind stuff up and
running.  Would anyone have any objections to moving them across?

     Thomas.

On Sun, Oct 20, 2002 at 10:51:13PM +0100, Matthew Pocock wrote:
> Everyone: OOps - I think we mucked up here. I guess we should have used 
> database IDs, not SequenceDB objects.
> 
> Lena: Try writing an inner class impl of SequenceDBInstallation and 
> SequenceDB with each method throwing an UnsupportedOperationException 
> and then adding in methods as/when your app crashes due to one being 
> thrown. Please do send us any code snippets you have allong with any 
> error messages and stack traces. This may be time to do better with the 
> API. Sory for the trouble you've had.
> 
> Matthew
> 
> elena_taycher wrote:
> >Hi,
> >
> >I am trying to use biojava to parse the 
> >output of bl2seq (blastn and blastp).
> >Since I can not supply appropriate sequenceDB and
> >SequenceDBInstallation documentation advises to use anonymous 
> >inner classes. I was not successuful in that.
> >Can anyone send to me code snippets that I can use.
> >
> >Thank you.
> >Lena