[Biojava-dev] Test results for biojava1.22
Schreiber, Mark
mark.schreiber@agresearch.co.nz
Thu, 22 Aug 2002 12:54:27 +1200
runtests:
[junit] Running
org.biojava.bio.program.ssbind.SSBindNCBItblastx2_0_11Test
[junit] Tests run: 7, Failures: 0, Errors: 7, Time elapsed: 0.169
sec
[junit] TEST
org.biojava.bio.program.ssbind.SSBindNCBItblastx2_0_11Test FAILED
[junit] Running
org.biojava.bio.program.ssbind.SSBindWUtblastn2_0a19Test
[junit] Tests run: 7, Failures: 0, Errors: 7, Time elapsed: 0.174
sec
[junit] TEST
org.biojava.bio.program.ssbind.SSBindWUtblastn2_0a19Test FAILED
[junit] Running
org.biojava.bio.program.ssbind.SSBindNCBIblastx2_0_11Test
[junit] Tests run: 7, Failures: 0, Errors: 7, Time elapsed: 0.168
sec
[junit] TEST
org.biojava.bio.program.ssbind.SSBindNCBIblastx2_0_11Test FAILED
[junit] Running
org.biojava.bio.program.ssbind.SSBindWUblastx2_0a19Test
[junit] Tests run: 7, Failures: 0, Errors: 7, Time elapsed: 0.168
sec
[junit] TEST org.biojava.bio.program.ssbind.SSBindWUblastx2_0a19Test
FAILED
[junit] Running
org.biojava.bio.program.ssbind.SSBindNCBIblastp2_0_11Test
[junit] Tests run: 7, Failures: 0, Errors: 7, Time elapsed: 0.167
sec
[junit] TEST
org.biojava.bio.program.ssbind.SSBindNCBIblastp2_0_11Test FAILED
[junit] Running
org.biojava.bio.program.ssbind.SSBindNCBItblastn2_0_11Test
[junit] Tests run: 7, Failures: 0, Errors: 7, Time elapsed: 0.169
sec
[junit] TEST
org.biojava.bio.program.ssbind.SSBindNCBItblastn2_0_11Test FAILED
[junit] Running
org.biojava.bio.program.ssbind.SSBindNCBIblastn2_0_11Test
[junit] Tests run: 7, Failures: 0, Errors: 7, Time elapsed: 0.171
sec
[junit] TEST
org.biojava.bio.program.ssbind.SSBindNCBIblastn2_0_11Test FAILED
[junit] Running
org.biojava.bio.program.ssbind.SSBindWUblastp2_0a19Test
[junit] Tests run: 7, Failures: 0, Errors: 7, Time elapsed: 0.167
sec
[junit] TEST org.biojava.bio.program.ssbind.SSBindWUblastp2_0a19Test
FAILED
[junit] Running
org.biojava.bio.program.ssbind.SSBindWUblastn2_0a19Test
[junit] Tests run: 7, Failures: 0, Errors: 7, Time elapsed: 0.17 sec
[junit] TEST org.biojava.bio.program.ssbind.SSBindWUblastn2_0a19Test
FAILED
[junit] Running
org.biojava.bio.program.ssbind.SSBindWUtblastx2_0a19Test
[junit] Tests run: 7, Failures: 0, Errors: 7, Time elapsed: 0.168
sec
[junit] TEST
org.biojava.bio.program.ssbind.SSBindWUtblastx2_0a19Test FAILED
[junit] Running org.biojava.bio.program.ssbind.SSBindFasta3_3t08Test
[junit] Tests run: 7, Failures: 0, Errors: 7, Time elapsed: 0.17 sec
[junit] TEST org.biojava.bio.program.ssbind.SSBindFasta3_3t08Test
FAILED
[junit] Running org.biojava.bio.seq.db.emblcd.DivisionLkpReaderTest
[junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 0.065
sec
[junit] Running org.biojava.bio.seq.db.emblcd.EntryNamIdxReaderTest
[junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 0.071
sec
[junit] Running
org.biojava.bio.seq.db.emblcd.EntryNamRandomAccessTest
[junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 0.053
sec
[junit] Running org.biojava.bio.seq.db.EmblCDROMIndexStoreTest
[junit] Tests run: 11, Failures: 0, Errors: 1, Time elapsed: 0.95
sec
[junit] TEST org.biojava.bio.seq.db.EmblCDROMIndexStoreTest FAILED
[junit] Running org.biojava.bio.seq.io.agave.AGAVEHandlerTest
[junit] Tests run: 3, Failures: 0, Errors: 0, Time elapsed: 2.465
sec
[junit] Running org.biojava.bio.seq.io.LocationFormatterTest
[junit] Tests run: 26, Failures: 0, Errors: 0, Time elapsed: 1.049
sec
[junit] Running org.biojava.bio.seq.FilterUtilsTest
[junit] Tests run: 8, Failures: 0, Errors: 0, Time elapsed: 0.158
sec
[junit] Running org.biojava.bio.seq.SubSequenceTest
[junit] Tests run: 5, Failures: 0, Errors: 0, Time elapsed: 1.068
sec
[junit] Running org.biojava.bio.seq.SimpleAssemblyTest
[junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 1.113
sec
[junit] Running org.biojava.bio.symbol.PointLocationTest
[junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 0.109
sec
[junit] Running org.biojava.bio.symbol.BetweenLocationTest
[junit] Tests run: 34, Failures: 0, Errors: 0, Time elapsed: 0.114
sec
[junit] Running org.biojava.bio.symbol.CrossProductTokenizationTest
[junit] Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.835
sec
[junit] Running org.biojava.bio.symbol.RangeLocationTest
[junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 0.082
sec
[junit] Running org.biojava.bio.symbol.TranslationTest
[junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 1.013
sec
[junit] Running org.biojava.bio.symbol.SimpleSymbolListTest
[junit] Tests run: 8, Failures: 0, Errors: 0, Time elapsed: 0.836
sec
[junit] Running org.biojava.bio.symbol.NameTokenizationTest
[junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 0.822
sec
[junit] Running org.biojava.bio.symbol.CompoundLocationTest
[junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 0.124
sec
[junit] Running org.biojava.bio.dist.DistributionTest
[junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 0.879
sec
[junit] Running org.biojava.bio.search.SequenceDBSearchSubHitTest
[junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 0.918
sec
[junit] Running org.biojava.bio.search.SequenceDBSearchResultTest
[junit] Tests run: 5, Failures: 0, Errors: 0, Time elapsed: 0.884
sec
[junit] Running org.biojava.bio.search.SequenceDBSearchHitTest
[junit] Tests run: 6, Failures: 0, Errors: 0, Time elapsed: 0.929
sec
> -----Original Message-----
> From: Matthew Pocock [mailto:matthew_pocock@yahoo.co.uk]
> Sent: Thursday, 22 August 2002 11:36 a.m.
> To: Schreiber, Mark
> Cc: biojava-dev@biojava.org
> Subject: Re: [Biojava-dev] RE: [Biojava-l] Source code
>
>
> Schreiber, Mark wrote:
> > Lots of tests failed on the 1.2 branch esp the ssbind
> packages. There
> > actually seems to be a lot of tests that are in the
> biojava-live dist
> > that are missing.
>
> If you do "cvs update -r release-1_21" (magic to make your repository
> look like the one the 1.21 release came from) and re-run the test do
> they still fail? If they failed in the 1.21 release then I'm
> not overly
> worried about them bombing in 1.22
>
> >
> > Given that biojava-live currently passes all its tests what about
> > doing a 1.3 release?
>
> Perhaps in the next 1-2 months? What should be working by then that
> isn't now? What is totaly missing that should be there? What are we
> going to give up on and put in the developmental area?
>
> >
> > - Mark
> >
> ======================================================================
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