[Biocorba-l] BSANE/BioCORBA 0.03 (rBradChapman)

[Juha Muilu]

Good work guys!

Jason Eric Stajich wrote:
> 
> Ewan and I have started coding bioperl corba server code - we are using
> Brad's changes to locations see
> http://cvs.bioperl.org/cgi-bin/viewcvs/viewcvs.cgi/bioperl-corba-server/idl/seqcore.idl?rev=HEAD&content-type=text/vnd.viewcvs-markup&cvsroot=bioperl

Please feel free to put all IDLs into the bioPerl/bioCORBA CVS
repository. Actually Ewan asked me to do it sometime ago already (Sorry
Ewan :-)). 

> 
> For the version we are using.
> New Location model is a serious pain, but I will try and get these
> implemented in the near future so we can begin to test.
> 
> Brad which modules have you implemented - I went to
> checkout of biopython-corba but wasn't sure where you put some of this
> code (I want to steal, ahem reuse, as much as possible =).
> 
> Juha - if you have any reservations or issues with any of the current IDLs
> please let us know, I'd like to think they are stable before I do a ton of
> coding.

I do not have much reservations. Here is my wish list:

 - Better module names. Especially bsane is should be changed to
BioObjects or
   something better. Suggestions?
 - SeqFeatureLocation name is too "specialized". It should be
SeqLocation
   There are also cases where we use word region. Those should be
changed to 
   location (or vice versa)
 - Is the location operator useful anymore? Should we get rid of it?

Other thing is then that we would like to align the BSANE with the
MAGE-OM. It would be nice to reuse same entities. However we do not know
yet how far to go. More hands-on experience is needed (also these
iteratons do not seem to have an end). Martin has asked 3 months
extension for the revised submission because of that. 


Juha


> 
> -jason
> 
> --
> Jason Stajich
> Duke University
> jason@cgt.mc.duke.edu
> 
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