[Open-bio-l] Best practice for modelling data in GFF
Giovanni Marco Dall'Olio
dalloliogm at gmail.com
Fri May 28 12:35:49 EDT 2010
why don't you ask this here:
this mailing list is just to discuss topics related to the OpenBio
projects, like BioPerl, BioPython, etc..
You will find more people in biostars.
On Fri, May 28, 2010 at 6:29 PM, Dan Bolser <dan.bolser at gmail.com> wrote:
> Hi guys,
> Not sure if this is the right forum, but I just thought I'd ask...
> Where can I find information on 'best practices' for modelling
> biological data in GFF?
> For example, I'd like to model paired-end sequence alignments in GFF.
> One suggestion was to use match/match_part to link each end into a
> pair. Another option is to use 'read_pair' with 'contig' for the
> parent feature...
> Should I just be using SAM/BAM?
> Seems a shame not to have a standard way to do this in GFF...
> Open-Bio-l mailing list
> Open-Bio-l at lists.open-bio.org
Giovanni Dall'Olio, phd student
Department of Biologia Evolutiva at CEXS-UPF (Barcelona, Spain)
My blog on bioinformatics: http://bioinfoblog.it
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