[Open-bio-l] Common SQLite3 schema for flat file indexing (a new OBDA standard)?

Peter biopython at maubp.freeserve.co.uk
Tue Jun 8 05:43:46 EDT 2010

On Mon, Jun 7, 2010 at 9:17 PM, Chris Fields <cjfields at illinois.edu> wrote:
> It would be nice to have a standard for this that works cross-Bio*
> (and possibly beyond).  That was the original intent.  Maybe OBDA
> v2 if needed?

Yes, that was what I was suggesting.

With the Biopython code I'm almost in a position to start bench marking
different on disk indexes (SQLite isn't necessarily the best option);
supporting indexing multiple files at once (which would be needed to
restore parity with OBDA v1) is more work.


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