From darin.london at duke.edu  Mon Jul  3 08:41:33 2006
From: darin.london at duke.edu (Darin London)
Date: Mon, 03 Jul 2006 08:41:33 -0400
Subject: [Open-bio-l] Call For Birds of a Feather Suggestions
Message-ID: <44A9107D.2050304@duke.edu>

The BOSC organizing comittee is currently seeking suggestions for Birds
of a Feather meeting ideas. Birds of a Feather meetings are one of the
more popular activities at BOSC, occurring at the end of each days
session. These are free-form meetings organized by the attendees
themselves to discuss one or a few topics of interest in greater detail.
BOF?s have been formed to allow developers and users of individual OBF
software to meet each other face-to-face to discuss the project, or to
discuss completely new ideas, and even start new software development
projects. These meetings offer a unique opportunity for individuals to
explore more about the activities of the various Open Source Projects,
and, in some cases, even take an active role influencing the future of
Open Source Software development. If you would like to create a BOF,
just sign up for a wiki account, login, and edit the <a
href="http://www.open-bio.org/wiki/BOSC_2006/Birds-of-a-Feather">BOSC
2006 Birds of a Feather page</a>.

From pim.van.nierop at falw.vu.nl  Wed Jul  5 09:53:39 2006
From: pim.van.nierop at falw.vu.nl (Pim van Nierop)
Date: Wed, 05 Jul 2006 15:53:39 +0200
Subject: [Open-bio-l] Prolem with loading bioseqsql scheme
Message-ID: <44ABC463.4010608@falw.vu.nl>

Hello all,

I have just started out exploring using bioSQL in combination with PERL 
scripting to run a local instance of GenBank on mySQL at my lab. I have 
to appologize for my ignorance beforehand, as I do not know much about 
mySQL.

I followed the instructions as provided on the BioPerl wiki page on how 
to start using bioSQL with bioPerl. Unfortunately, I seem to get stuck 
when loading my newly created  database named "bioseqdb" with 
"biosqldb-mysql.sql" file.

I use this command:
 >mysql -u root -p bioseqdb < c:\biosqldb-mysql.sql

This generates the following error:
ERROR 1005 (HY000) at line 39: Can't create table 
'.\bioseqdb\biodatabase.frm' (errno: 121)

I looked on th einternet what the errorcode ERROR 1005 errno: 121 means. 
It seems it has something to do with foreign keys, but I have no clue 
how to act from here.

Could someone please explain what I am doing wrong?

Oh yeah, I use a windows XP system.

All the best,

Pim

-- 
*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-

      Pim van Nierop

      Department of Molecular and Cellular Neurobiology
      Faculty of Earth and Life Sciences
      Vrije Universiteit
      Amsterdam

      Tel. +31 (0)20 5987114
      Fax. +31 (0)20 5987112

*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-


From pim.van.nierop at falw.vu.nl  Thu Jul  6 05:19:24 2006
From: pim.van.nierop at falw.vu.nl (Pim van Nierop)
Date: Thu, 06 Jul 2006 11:19:24 +0200
Subject: [Open-bio-l] [Fwd: Prolem with loading bioseqsql scheme]
Message-ID: <44ACD59C.3020604@falw.vu.nl>

I resend this message as I shipped it before my participation to this 
mailing list was confirmed. I am sorry if its a double post.

-------- Original Message --------
Subject: 	Prolem with loading bioseqsql scheme
Date: 	Wed, 05 Jul 2006 15:53:39 +0200
From: 	Pim van Nierop <pim.van.nierop at falw.vu.nl>
To: 	open-bio-l at lists.open-bio.org



Hello all,

I have just started out exploring using bioSQL in combination with PERL 
scripting to run a local instance of GenBank on mySQL at my lab. I have 
to appologize for my ignorance beforehand, as I do not know much about 
mySQL.

I followed the instructions as provided on the BioPerl wiki page on how 
to start using bioSQL with bioPerl. Unfortunately, I seem to get stuck 
when loading my newly created  database named "bioseqdb" with 
"biosqldb-mysql.sql" file.

I use this command:
>mysql -u root -p bioseqdb < c:\biosqldb-mysql.sql

This generates the following error:
ERROR 1005 (HY000) at line 39: Can't create table 
'.\bioseqdb\biodatabase.frm' (errno: 121)

I looked on th einternet what the errorcode ERROR 1005 errno: 121 means. 
It seems it has something to do with foreign keys, but I have no clue 
how to act from here.

Could someone please explain what I am doing wrong?

Oh yeah, I use a windows XP system.

All the best,

Pim

-- 
*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-

     Pim van Nierop

     Department of Molecular and Cellular Neurobiology
     Faculty of Earth and Life Sciences
     Vrije Universiteit
     Amsterdam

     Tel. +31 (0)20 5987114
     Fax. +31 (0)20 5987112

*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-




-- 
*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-

      Pim van Nierop

      Department of Molecular and Cellular Neurobiology
      Faculty of Earth and Life Sciences
      Vrije Universiteit
      Amsterdam

      Tel. +31 (0)20 5987114
      Fax. +31 (0)20 5987112

*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-


From MAILER-DAEMON at icculus.org  Mon Jul 10 08:41:25 2006
From: MAILER-DAEMON at icculus.org (MAILER-DAEMON at icculus.org)
Date: 10 Jul 2006 08:41:25 -0400
Subject: [Open-bio-l] failure notice
Message-ID: <200607102217.k6AMHOIm012591@newportal.open-bio.org>

Hi. This is the qmail-send program at icculus.org.
I'm afraid I wasn't able to deliver your message to the following addresses.
This is a permanent error; I've given up. Sorry it didn't work out.

<openal-subscribe at icculus.org>:
Please direct your emails to the new list. Send a blank email to openal-subscribe at openal.org to subscribe.

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Reply-to: "open-bio-l at lists.open-bio.org" <open-bio-l at lists.open-bio.org>
From: "open-bio-l at lists.open-bio.org" <open-bio-l at lists.open-bio.org>
Date: Mon, 10 Jul 2006 12:33:28 -0300
Message-ID: nwV2R10CWIMlZ.Ygo035xfVWM83 at lists.open-bio.org
To: openal-subscribe at icculus.org
Content-type: text/html;
 Charset=Windows-1251
Subject: Your penis is smaller than the smallest cell phone. Forget about it with Penis Enlarge Patch. 
MIME-Version: 1.0

Get enormous, b1g and thick, pretty, long, amazing dick.<BR>And Pen1s Enlarge Patch can do @l] thi$ f0r you.<BR>
Why do $o many men a]l over the world <acw></acw>choose Penis Enlarge Patch?<BR>Because it <acm></acm>really works and satisfies all your needs? <BR>
<A href="http://www.diefen.net/pt/?108&8bmLd6tsBdCpn">http://www.diefen.net/pt/?108&KReWM8YYDw3Bc</A><BR>

 

From nugxkskglhz at amladvisors.com  Wed Jul 12 10:26:04 2006
From: nugxkskglhz at amladvisors.com (Carol Holley)
Date: Wed, 12 Jul 2006 10:26:04 -0400
Subject: [Open-bio-l] nauseate depend
Message-ID: <000701c6a5c0$16c60d72$18dd3d18@nxvsr.kd>


Watch ALERT for all members starting now.

Media plan launched today for  S R V N . O B
This is a FRESH compnay and we expect the pick be EXPLOSIVE !


Sound Revolution Inc (OTCBB: SRVN)

Common Shares Outstanding: 10,391,191
Approx. Float: 1,081,250

RECENT PRICE: $ 0.855
RATING: Strong Buy (10/10)

Short Term Target Price: $2.50
Long Term Target Price: $6.00



A Revolutionary new way for artists to connect with fans and for shareholders to connect with gains;good for profit, good for the soul. Sound Revolution Inc, an online music distribution company,is revolutionizing the way digital music is sold.  Artists are continually looking for socially beneficial ways to promote their music.  Advertising is out as consumers are increasingly skeptical of any advertising and loathe artists seen as "selling out".  SRVN solves the problem by having charities promote for them and puts the artist in an altruistic light.

Consumers are increasingly turning to the web for digital content. At the same time public support for social causes, both systematic and event driven, like the fight against AIDS in Africa or Global poverty, and the recent outpouring of relief aid for the Hurricane Katrina disaster in New Orleans, are clear markets that consumers will use their dollars to make a difference.  Each song that is downloaded from Charitytunes.com, purchaser can donate 10% of each song price to a charitable cause of their choice.

SRVN?s unique business model marries business with social meaning and its competitive advantage gives purchasers that "good deed" feeling everyone is after these days.  But that?s not all. SRVN has built a state of the art backend system to allow expansion of the music library very quickly. And purchasers can rest assured that transaction security and donor secrecy are among the best in the business.

And SRVN is quickly building a world class management team according to recent news releases.

So lets do the math:  Analysts predict industry revenues at $9 billion.  With the management and artists already interested in SRVN, even it only manages to garner a 1% market share (very conservative) that equates to $90 million in revenues.  With only 10 million shares outstanding (most of which are restricted), each share would be worth $9 in revenues alone!




From hejianrong at gmail.com  Sun Jul 16 01:11:22 2006
From: hejianrong at gmail.com (Gary Ho)
Date: Sun, 16 Jul 2006 13:11:22 +0800
Subject: [Open-bio-l] join
Message-ID: <bbbb53900607152211vbaf5ca4s4cf316c459e61972@mail.gmail.com>

-- 
Best Regards
Gary

From darin.london at duke.edu  Mon Jul  3 12:41:33 2006
From: darin.london at duke.edu (Darin London)
Date: Mon, 03 Jul 2006 08:41:33 -0400
Subject: [Open-bio-l] Call For Birds of a Feather Suggestions
Message-ID: <44A9107D.2050304@duke.edu>

The BOSC organizing comittee is currently seeking suggestions for Birds
of a Feather meeting ideas. Birds of a Feather meetings are one of the
more popular activities at BOSC, occurring at the end of each days
session. These are free-form meetings organized by the attendees
themselves to discuss one or a few topics of interest in greater detail.
BOF?s have been formed to allow developers and users of individual OBF
software to meet each other face-to-face to discuss the project, or to
discuss completely new ideas, and even start new software development
projects. These meetings offer a unique opportunity for individuals to
explore more about the activities of the various Open Source Projects,
and, in some cases, even take an active role influencing the future of
Open Source Software development. If you would like to create a BOF,
just sign up for a wiki account, login, and edit the <a
href="http://www.open-bio.org/wiki/BOSC_2006/Birds-of-a-Feather">BOSC
2006 Birds of a Feather page</a>.


From pim.van.nierop at falw.vu.nl  Wed Jul  5 13:53:39 2006
From: pim.van.nierop at falw.vu.nl (Pim van Nierop)
Date: Wed, 05 Jul 2006 15:53:39 +0200
Subject: [Open-bio-l] Prolem with loading bioseqsql scheme
Message-ID: <44ABC463.4010608@falw.vu.nl>

Hello all,

I have just started out exploring using bioSQL in combination with PERL 
scripting to run a local instance of GenBank on mySQL at my lab. I have 
to appologize for my ignorance beforehand, as I do not know much about 
mySQL.

I followed the instructions as provided on the BioPerl wiki page on how 
to start using bioSQL with bioPerl. Unfortunately, I seem to get stuck 
when loading my newly created  database named "bioseqdb" with 
"biosqldb-mysql.sql" file.

I use this command:
 >mysql -u root -p bioseqdb < c:\biosqldb-mysql.sql

This generates the following error:
ERROR 1005 (HY000) at line 39: Can't create table 
'.\bioseqdb\biodatabase.frm' (errno: 121)

I looked on th einternet what the errorcode ERROR 1005 errno: 121 means. 
It seems it has something to do with foreign keys, but I have no clue 
how to act from here.

Could someone please explain what I am doing wrong?

Oh yeah, I use a windows XP system.

All the best,

Pim

-- 
*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-

      Pim van Nierop

      Department of Molecular and Cellular Neurobiology
      Faculty of Earth and Life Sciences
      Vrije Universiteit
      Amsterdam

      Tel. +31 (0)20 5987114
      Fax. +31 (0)20 5987112

*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-



From pim.van.nierop at falw.vu.nl  Thu Jul  6 09:19:24 2006
From: pim.van.nierop at falw.vu.nl (Pim van Nierop)
Date: Thu, 06 Jul 2006 11:19:24 +0200
Subject: [Open-bio-l] [Fwd: Prolem with loading bioseqsql scheme]
Message-ID: <44ACD59C.3020604@falw.vu.nl>

I resend this message as I shipped it before my participation to this 
mailing list was confirmed. I am sorry if its a double post.

-------- Original Message --------
Subject: 	Prolem with loading bioseqsql scheme
Date: 	Wed, 05 Jul 2006 15:53:39 +0200
From: 	Pim van Nierop <pim.van.nierop at falw.vu.nl>
To: 	open-bio-l at lists.open-bio.org



Hello all,

I have just started out exploring using bioSQL in combination with PERL 
scripting to run a local instance of GenBank on mySQL at my lab. I have 
to appologize for my ignorance beforehand, as I do not know much about 
mySQL.

I followed the instructions as provided on the BioPerl wiki page on how 
to start using bioSQL with bioPerl. Unfortunately, I seem to get stuck 
when loading my newly created  database named "bioseqdb" with 
"biosqldb-mysql.sql" file.

I use this command:
>mysql -u root -p bioseqdb < c:\biosqldb-mysql.sql

This generates the following error:
ERROR 1005 (HY000) at line 39: Can't create table 
'.\bioseqdb\biodatabase.frm' (errno: 121)

I looked on th einternet what the errorcode ERROR 1005 errno: 121 means. 
It seems it has something to do with foreign keys, but I have no clue 
how to act from here.

Could someone please explain what I am doing wrong?

Oh yeah, I use a windows XP system.

All the best,

Pim

-- 
*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-

     Pim van Nierop

     Department of Molecular and Cellular Neurobiology
     Faculty of Earth and Life Sciences
     Vrije Universiteit
     Amsterdam

     Tel. +31 (0)20 5987114
     Fax. +31 (0)20 5987112

*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-




-- 
*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-

      Pim van Nierop

      Department of Molecular and Cellular Neurobiology
      Faculty of Earth and Life Sciences
      Vrije Universiteit
      Amsterdam

      Tel. +31 (0)20 5987114
      Fax. +31 (0)20 5987112

*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-



From MAILER-DAEMON at icculus.org  Mon Jul 10 12:41:25 2006
From: MAILER-DAEMON at icculus.org (MAILER-DAEMON at icculus.org)
Date: 10 Jul 2006 08:41:25 -0400
Subject: [Open-bio-l] failure notice
Message-ID: <200607102217.k6AMHOIm012591@newportal.open-bio.org>

Hi. This is the qmail-send program at icculus.org.
I'm afraid I wasn't able to deliver your message to the following addresses.
This is a permanent error; I've given up. Sorry it didn't work out.

<openal-subscribe at icculus.org>:
Please direct your emails to the new list. Send a blank email to openal-subscribe at openal.org to subscribe.

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From: "open-bio-l at lists.open-bio.org" <open-bio-l at lists.open-bio.org>
Date: Mon, 10 Jul 2006 12:33:28 -0300
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To: openal-subscribe at icculus.org
Content-type: text/html;
 Charset=Windows-1251
Subject: Your penis is smaller than the smallest cell phone. Forget about it with Penis Enlarge Patch. 
MIME-Version: 1.0

Get enormous, b1g and thick, pretty, long, amazing dick.<BR>And Pen1s Enlarge Patch can do @l] thi$ f0r you.<BR>
Why do $o many men a]l over the world <acw></acw>choose Penis Enlarge Patch?<BR>Because it <acm></acm>really works and satisfies all your needs? <BR>
<A href="http://www.diefen.net/pt/?108&8bmLd6tsBdCpn">http://www.diefen.net/pt/?108&KReWM8YYDw3Bc</A><BR>

 


From nugxkskglhz at amladvisors.com  Wed Jul 12 14:26:04 2006
From: nugxkskglhz at amladvisors.com (Carol Holley)
Date: Wed, 12 Jul 2006 10:26:04 -0400
Subject: [Open-bio-l] nauseate depend
Message-ID: <000701c6a5c0$16c60d72$18dd3d18@nxvsr.kd>


Watch ALERT for all members starting now.

Media plan launched today for  S R V N . O B
This is a FRESH compnay and we expect the pick be EXPLOSIVE !


Sound Revolution Inc (OTCBB: SRVN)

Common Shares Outstanding: 10,391,191
Approx. Float: 1,081,250

RECENT PRICE: $ 0.855
RATING: Strong Buy (10/10)

Short Term Target Price: $2.50
Long Term Target Price: $6.00



A Revolutionary new way for artists to connect with fans and for shareholders to connect with gains;good for profit, good for the soul. Sound Revolution Inc, an online music distribution company,is revolutionizing the way digital music is sold.  Artists are continually looking for socially beneficial ways to promote their music.  Advertising is out as consumers are increasingly skeptical of any advertising and loathe artists seen as "selling out".  SRVN solves the problem by having charities promote for them and puts the artist in an altruistic light.

Consumers are increasingly turning to the web for digital content. At the same time public support for social causes, both systematic and event driven, like the fight against AIDS in Africa or Global poverty, and the recent outpouring of relief aid for the Hurricane Katrina disaster in New Orleans, are clear markets that consumers will use their dollars to make a difference.  Each song that is downloaded from Charitytunes.com, purchaser can donate 10% of each song price to a charitable cause of their choice.

SRVN?s unique business model marries business with social meaning and its competitive advantage gives purchasers that "good deed" feeling everyone is after these days.  But that?s not all. SRVN has built a state of the art backend system to allow expansion of the music library very quickly. And purchasers can rest assured that transaction security and donor secrecy are among the best in the business.

And SRVN is quickly building a world class management team according to recent news releases.

So lets do the math:  Analysts predict industry revenues at $9 billion.  With the management and artists already interested in SRVN, even it only manages to garner a 1% market share (very conservative) that equates to $90 million in revenues.  With only 10 million shares outstanding (most of which are restricted), each share would be worth $9 in revenues alone!





From hejianrong at gmail.com  Sun Jul 16 05:11:22 2006
From: hejianrong at gmail.com (Gary Ho)
Date: Sun, 16 Jul 2006 13:11:22 +0800
Subject: [Open-bio-l] join
Message-ID: <bbbb53900607152211vbaf5ca4s4cf316c459e61972@mail.gmail.com>

-- 
Best Regards
Gary