>gi|15667418|emb|CAC69977.1| Tbx3 protein [Oryzias latipes]
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------EVEDD---PKVHLEA--KELWE-------LFHKK-----------
---------------------------------------GTEMVITKSGRRMFPPFKVRC
------------------------------------------------------------
----------------------------------------TGLDKKAKYI----------
-------------------------------LLMDIVAADDCRYKFHN----------SR
WM----------VAGKADPEMPKRMYIHPDSPATG-------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
EQWMSKVVNFH---------------------KLKLTN----------------------
------------------------------------------------------------
---------------------------------------NISDKHGFVSS----------
----------TNTILNSMHKYQPR------------FHIV---------RANDILKLPYS
TFRTYVFPETDFIAVTA-------------------------------------------
-------------------------------------------YQNDKITQLKIDHNPFA
KGFRDT------------------------------------------------------
------------------------------------------------------------
----------------------------------
>gi|4505293|ref|NP_002457.1| MYB-related protein B [Homo sapiens]
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------------MSRRTRCEDL
DE----------------------------------------------------------
------------------------------------------------------------
----------------------LHYQDTDSDVPEQRDSKCKVKWTHEEDEQLRALVRQFG
QQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWT-------KEEDQKVIELVKKYGT
KQWTLIAKHLKGRLGKQC---------------------RERWHNHLNPEVKKSCWTEEE
----------------DRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDT
GGFLSESKDCKPPV--------------------------YLLLELEDKDGLQSAQPTEG
QGSLLTNWPSVPPTIKEEENSEEELAAATTSKEQEPIGTDLDAVRTPEPLEEFPKREDQE
GS------PPETSLPYKWVVEAANLLIPAVGSSLSEALDLIESDPDAWCDLSKFDLPEEP
SAEDSINNSLVQLQASHQQQVLPPRQPSALVPSVTEYRLDGHTISDLSRSSRGELIPI--
-----------------------------SPSTEVGGSGIGTPPS---------------
------------------------------------------------VLKRQRKRRVAL
SPVTENSTSLS---FLDSCNSLTPKSTPVKTLPFSPSQF---------------------
----------LNFWNKQD------------------------------------------
---------------------------------------TLELESPSLTSTPVCSQKVVV
TTPLHRDKTPLHQKHAAFVTPDQK------------YSMDNTPHTPTPFKNALEKY--GP
LKPLPQTPHLEEDLKEVLRSEAGIEL----------------------------------
-------------------------------------------IIEDDIRPEKQKRKPGL
RRSPIKKVRKSLALDIVDEDVKLMMSTLPKSLSLPTTAPSNSSSLTLSGIKEDNSLLNQG
FLQAKPEKAAVAQKPRSHFTTPAPMSSAWKTVACGGTRDQLFMQEKARQLLGRLKPSHTS
RTLILS----------------------------
>gi|85376478|gb|ABC70476.1| bruno-like [Schmidtea mediterranea]
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------------------MQVAS
PI----------------------------------------------------------
------------------------------------------------------------
-----------------------NVDSMALYSNGFTDKGNIIIQNHDENTKLFIGMLNK-
--------------NQSEDD---VRQLCEP--YGCIK-------NCMILKDSYGNSKGCA
FVTYNNSDEANMAIESLNGMKTSMACPEL----------GSCIVARLADNEQERQLRKMQ
----------------------MQFPAIQLLTPQNVGYYNQGIVPMILQQFPHATDQQTA
NLINAYALQ-------------------------------MHLSQMYSPN----------
---------LTPPLVNSSPSVTPQPQIGVPMSAANDISSNQCSMNHFV------------
--------LPSINNENIPLSPALNSYINPAHPQLI-------------------------
------------------------------------------------------------
-----------------------------NIANINFTPEALHLPS---------------
----------------------------------------------------------LY
SMFPQCGFNLNTPALGLSGQNIYPNTTALSLQYQQNQKD---------------------
---------GIKDNIVTGPE----------------------------------------
---------------------------------------GCNLFIYHLPQDFGDAA----
----------LAQLFTPFGNVISA------------KVYL--------DRATNQSKCFGF
VSFDNASNAEAAIRGMNG------------------------------------------
-------------------------------------------FQIGTKRLKVQLKRPKG
EYKN--------------------------------------------------------
------------------------------------------------------------
----------------------------------
>gi|186968859|gb|ACC97187.1| piwi protein WI-3 [Schmidtea mediterranea]
------------------------------------------------------------
------------------------------------------------------------
-----------------MSGSSGIGRGRSRGLLMQKFLNKDVLVPSVESLEDKALNKLGI
PPPGS-------------------------------------------------------
------------------------------------------------------------
----------------------TVEKNTESSSISSGDSRSNPSGDSRNNIKLQDSDIENR
NITIVTRPLSCIGRGRGLSN---PSSLTTS--SGKSDKITENEEPGQIKKFVGRGRGLLN
SQKECSNSTPSEVSNELKQMKISNDDKMTVSSEAKSQFENIEKPISKFRRREYPTQIKEP
--------------------CNTRNDSSPSLTLSANYVKVRTTQPHIYQYHVSFAPPIDS
RLMRIKIVQGLSESDLGVV---------------------KEARAFDGMNLYIPQLLKNK
ETIIKVNKPTDKTVVDVKVVFTNNVNFSECPMVYNVLFKRIENSLRMV----------KI
GRDYFYPEKKIVLDRRRMEIWPGYVTSIQNFDGGLLLQCDVSHKVIRNDSVYDIMMEINK
TVNNKGQMQTAAINQLLGQIVLTPHNNRNYRITDIDWAKNCLSEFDKGGEKISYRDYFRN
TYGLQIRDLEQPMIVSKSN----------SRSGKNRGPKGSKEVD----------GGLVY
LIPELCMLTGLTDDMIKDFRLMRELHEHCRVTPKKRH-----------EALLEFVDNIYS
CEEAKKLLGYWGITIEKDTVNINACKMNPEMIYFGNEASVSAGEQAEFKQALAHNKVIGG
IRIENWILISPKSLLTKANGLLQALMSKSPRVGVMFGKPKIVEMNNDRTEEYLKELKRNV
APGVQLVVTILSAVREDRYNAIKKFCYV-----------DCPVPSQVVLAQTLKEGPKLN
SVAVNIALQINAKLGGELWAVKIPIKKFMVVGLDVWHDTKGRSRSVGAVVGSTNALCTRW
FSKSHLQEQDKEIMYVLQSCMLSLLKAYFEENNFLPETIFMYRDGVSDGQLGYVQKTEIE
QFFKVFESFSADYKPNMVYNVVQKRINTRL-------------YVSDPKNKGQ-INNPNP
GTIVDHTVTRANLYDFFLVSQSVRQGTVTPTHYVVLCDNSKYTPHQVQLMAYKTCHIYYN
WPGTVRVPAPCMYAHKLAYMVGQNLKAEPSNLLCDRLFYL--------------------
----------------------------------
>gi|15559211|ref|NP_005603.2| RE1-silencing transcription factor [Homo sapiens]
MATQVMGQSSGGGGLFTSSGNIGMALPNDMYDLHDLSKAELAA-----------------
----------------------------------------------------------PQ
LIMLANVALTGEVNGSCCDYLVGEERQMAELMPVGDNNFSDSEEGEGLEESADIKGEPHG
LE----------------------------------------------------------
---------------------------------------------------NMELRSLEL
SVVEPQPVFEASGAPDIYSSNKDLPPETPGAEDKGKSSKTKPFRCKPCQYEAESEEQFVH
HIRVHSAKKFF---VEESAE---KQAKARE--SGSSTAEEGDFSKGPIRCDRCGYNTNRY
DHYTAHLKHHTRAGDNERVYKCIICTYTTVSEYHWRKHLRNHFPRKVYTCGKCNYFSDRK
NNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFKCDQCSYVASNQHEVT
RHAR------------------------------------QVHNGPKPLNCPHCDYKTAD
RSNFKKHVELHVNPRQFNCPVCDYAASKKCNLQYHFKSKHPTCPNKTM----------DV
SK------VKLKKTKKREADLPDNITNEKTEIEQTKIKGDVAGKKNEKSVKAEKRDVSKE
KKPSNNVSVIQVTTRTRKSVTEVKEMDVHTGSNSEKFSKTKKSKRKLEVDSHSLHGPVND
EESSTKKKKKVESKSKNNSQEVPKGD---SKVEENKKQNTCMKKSTKKKTLKNKSSKKSS
KPPQKEPVEKGSAQMDPPQMGPAPTEAVQKGPVQVELPPPMEHAQMEGAQIRPAPDEPVQ
MEVVQEGPAQKELLPPVEPAQMVGAQIVLAHMELPPPMETAQTEVAQMGPAPMEPAQMEV
AQVESAPMQVVQKEPVQMELSPPMEVVQKEPVQIELSPPMEVVQKEPVKIELSPPIEVVQ
KEPVQMELSPPM---------------------------GVVQKEPAQREPPPPREPPLH
MEPISKKPPLRKDKKEKSNMQSER------------ARKEQVLIEVGLVPVKDSWLLKES
VSTEDLSPPSPPLPKENLREEASGDQKLLNTGEGNKEAPLQKVGAEEADESLPGLAANIN
ESTHISSSGQNLNTPEGETLNGKHQTDSIVCEMKMDTDQNTRENLTGINST---VEEPVS
PMLPPSAVEEREAVSKTALASPPATMAANESQEIDEDEGIHSHEGSDLSDNMSEGSDDSG
LHGARPVPQESSRKNAKEALAVKAAKGDFVCIFCDRSFRKGKDYSKHLNRHLVNVYYLEE
AAQGQE----------------------------
>gi|22749363|ref|NP_689889.1| F-box protein 15 isoform 1 [Homo sapiens]
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------MPSEILLKIFSYLDAVSLLCTGC
VS----------------------------------------------------------
------------------------------------------------------------
----------------------RRFYHLANDNFIWIGIYSTAFSPARSNWKFNSVEKI--
--------------AMSMSF---LSVQDKE--AGYWK-------KEYITKQIASVKAALA
DILKPVNPYTGLPVKTKEALRIF----------------GLGWAIILKEKGGKEYIMEHV
DLSINDTSVTVIWYGKKWPCLASLSTLDLCGMTPVFTDWYKTPTKHRLRWHSLIAKYNLS
HLTISTMIGCD-----------------------------RLIRIFCLHP----------
----------------GLLVGVWKKEEELAFVMANLHFHHLVERSTLG----------SA
TIPYELPPHSPFLDDSPEYGLHGYQLHVDLHSGGV-------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------FYL
CGTFRNLFTKR--------GNIENGHVKLIVIHLKNNRE---------------------
---------HLPLIGKVGLSW---------------------------------------
---------------------------------------KTDIFDGCIKSCSMMDVTL--
----------LDEHGKPFWCFSSP------------VCLR------SPATPSDSSSFLGQ
TYNVDYVDAEGRVHVELV------------------------------------------
-------------------------------------------WIRETEEY---LIVNLV
LYLSIAKINHWFGTEY--------------------------------------------
------------------------------------------------------------
----------------------------------
>gi|13375938|ref|NP_078950.1| lin-28 homolog [Homo sapiens]
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------MGSVSNQQFAGGCAKAAEEA----------------
-----------------------PEEAPED--AARAA-------DEPQLLHGAGICKWFN
VRM------------------------------------GFGFLSMTARAGVALDPPVDV
-----------------------------FVHQSKLHMEGFRSLK---------------
----------------------------------------EGEAVEFTFK----------
------------------------------------------------------------
--------KSAKGLESIRVTGPGGVFCIGSERRPK-------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------GKSMQKR--------------
----------RSKGDRCYNCGGLD------------HHAKECKLPPQPKKCHFCQSISHM
VASCPLKAQQGPSAQGKPT-----------------------------------------
-------------------------------------------YFREEEEE---IHSPTL
LPEAQN------------------------------------------------------
------------------------------------------------------------
----------------------------------
>gi|157057099|ref|NP_033582.2| zinc finger protein 42 [Mus musculus]
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------------------MNEQK
MN----------------------------------------------------------
------------------------------------------------------------
----------------------EQMKKTAKTSGQKGPGGRALDRLTLKQDEARPVQNTR-
--------------VEAPRV---TYTIRDE-----SE-------ISPET-EEDGFPD---
-----------------------------------------GYLECIIRGEFSEPILEED
-------------------FLFKSFESLEE-VEQNLSRQVLEASSLLESSL---------
----------------------------------------EYMTKGTKQE----------
------------------------------------------------------------
KR------EVTQETPPLRVGASSLLAGGPAEKPEG-------------------------
------------------------------------------------------------
-----------------------------GVYCGVLSMLECPQAG---------------
-----------------------------------------------------------C
KKKLRDKTALR--------KHM----------LVHGPRR---------------------
-------------HVCA-------------------------------------------
---------------------------------------ECG--KAFTESSKLKRHFL--
----------VHTGEKPY---------------------------QCTFEGCGKRFSLDF
NLRTHIRIHTGERRFVCPFDGCEKS-----------------------------------
-------------------------------------------FIQSNNQK---IHILTH
AKAGKKC-----------------------------------------------------
------------------------------------------------------------
----------------------------------
>gi|89179323|ref|NP_777560.2| zinc finger protein 42 [Homo sapiens]
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
MS----------------------------------------------------------
------------------------------------------------------------
----------------------QQLKKRAKTRHQKGLGGRAPSGAKPRQGKSSQDLQAE-
--------------IEPVSA---VWALCDG--YVCYE-------PGPQALGGDDFSD---
-----------------------------------------CYIECVIRGEFSQPILEED
-------------------SLFESLEYLKKGSEQQLSQKVFEASS-LECSL---------
----------------------------------------EYMKKGVKKE----------
-------------------------------LPQKIVGENSLEYSEYM----------TG
KK------LPPGGIPGIDLSDPKQLAEFARKKPPI-------------------------
------------------------------------------------------------
-----------------------------NKEYDSLSAIACPQSG---------------
-----------------------------------------------------------C
TRKLRNRAALR--------KHL----------LIHGPRD---------------------
-------------HVCA-------------------------------------------
---------------------------------------ECG--KAFVESSKLKRHFL--
----------VHTGEKPF---------------------------RCTFEGCGKRFSLDF
NLRTHVRIHTGEKRFVCPFQGCNRR-----------------------------------
-------------------------------------------FIQSNNLK---AHILTH
ANTNKNEQEGK-------------------------------------------------
------------------------------------------------------------
----------------------------------
>gi|42560248|ref|NP_002692.2| POU domain, class 5, transcription factor 1 isoform 1 [Homo sapiens]
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------------------MAGHL
AS----------------------------------------------------------
------------------------------------------------------------
----------------------DFAFSPPPGGGGDGPGGPEPGWVDPRTWLSFQGP----
--------------PGGPGI---GPGVGPG--SEVWG--IPPCPPPYEFCGGMAYCGPQV
GVGLVPQGGLETSQPEGEAGVGVESNSDG----------ASPEPCTVTPGAVKLEKEKLE
-------------------QNPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTL
GVLFGKV---------------------------------FSQTTICRFE----------
--------------------------------ALQLSFKNMCKLRPLL----------QK
WV------EEADNNENLQEICKAETLVQARKRKRT-------------------------
------------------------------------------------------------
-----------------------------SIENRVRGNLENL------------------
-----------------------------------------------------------F
LQCPKPTLQQI--------SHIAQ--------QLGLEKD---------------------
---------VVRVWFC--------------------------------------------
---------------------------------------NRRQKGKRSSSDYAQRED---
----------FEAAGSPFSGGPVS------------FPLA-----PGPHFGTPGYGSPHF
TALYSSVPFPEGEA----------------------------------------------
-------------------------------------------FPPVSVTT---LGSPMH
SN----------------------------------------------------------
------------------------------------------------------------
----------------------------------
>gi|116235491|ref|NP_976034.3| POU domain, class 5, transcription factor 1 isoform 2 [Homo sapiens]
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------MHFYRL--------------------------------
--------------FLGATR---RFLNPEW--KGEID-------------------NWCV
YVLTSLLPF------------------------------KIQSQDIKALQKELEQFAKLL
----------------------KQKRITLGYTQADVGLTLGVLFGKVF------------
-----------------------------------------SQTTICRFE----------
--------------------------------ALQLSFKNMCKLRPLL----------QK
WV------EEADNNENLQEICKAETLVQARKRKRT-------------------------
------------------------------------------------------------
-----------------------------SIENRVRGNLENL------------------
-----------------------------------------------------------F
LQCPKPTLQQI--------SHIAQ--------QLGLEKD---------------------
---------VVRVWFC--------------------------------------------
---------------------------------------NRRQKGKRSSSDYAQRED---
----------FEAAGSPFSGGPVS------------FPLA-----PGPHFGTPGYGSPHF
TALYSSVPFPEGEA----------------------------------------------
-------------------------------------------FPPVSVTT---LGSPMH
SN----------------------------------------------------------
------------------------------------------------------------
----------------------------------
>gi|15220767|ref|NP_176426.1| STM (SHOOT MERISTEMLESS); transcription factor [Arabidopsis thaliana]
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------MESGSNSTSCPMAFAGDNSDGPMCPMMMM---------
-----------------------MPPIMTS--HQH---------HGHDHQHQQQEHDGYA
YQS------------------------------------HHQQSSSLFLQSLAPPQGTKN
------------------------------KVASSSSPSSCAPAYSLMEIH---------
----------------------------------------HNEIVAGGIN----------
-----------------PCSSSSSSASVKAKIMAHPHYHRLLAAYVNC----------QK
VG------APPEVVARLEEACSSA------------------------------------
------------------------------------------------------------
-----------------------------AAAAASMGPTGCLGED---------------
------------------PGLDQFMEAYCEMLVKYEQ-----------ELSKPFKEAMVF
LQRVECQFKSL---------------------SLSSPSS---------------------
----------FSGYGETAIDRNNNGSSEE-------------------------------
---------------------------------------EVDMNNEFVDPQAEDRELK--
----------GQLLRKYSGYLGSL------------KQEFMKKRKKGKLPKEARQQLLDW
WSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRH--------------------
-------------------------------------------WKPSEDMQFVVMDATHP
HHYFMDNVLGNPFPMDHISSTML-------------------------------------
------------------------------------------------------------
----------------------------------
>gi|10047144|ref|NP_065169.1| sal-like 4 [Homo sapiens]
MSRRKQAKPQHINSEEDQGEQQPQQQTPEFADAAPAAPAAGELGAP--------------
----------------------------------VNHPGNDEVASEDEATVKRLRREETH
VCEKCCAEFFSISEFLEHKKNCTKNPPVLIMNDSEGPVPSEDFSGAVLSHQPTSPGSKDC
HRENGGSSE---------------------------------------------------
------------------------------------------------------------
----------------------DMKEKPDAESVVYLKTETALPPTPQDISYLAKGKVANT
NVTLQALRGTKVAVNQRSADALPAPVPGAN--SIPWVLEQILCLQQQQLQQIQLTEQIRI
QVNMWASHALHSSGAGADTLKTLGSHMSQQVSAAVALLSQKAGSQGLSLDALKQAKLPHA
------------------NIPSATSSLSPGLAPFTLKPDGTRVLPNVMSRLPSALLPQAP
GSVLFQSPFSTVALDTSKKGKGKPPNISAVDVKP------KDEAALYKHKCKYCSKVFGT
DSSLQIHLRSHTGERPFVCSVCGHRFTTKGNLKVHFHRHPQVKANPQLFAEFQDKVAAGN
GIPYALSVPDPIDEPSLSLDSKPVLVTTSVGLPQNLSSGTNPKDLTGGSLPGDLQPGPSP
ESEGGPTLPGVGPNYNS-------------------------------------------
-----------------------------PRAGGFQGSGTPEPGS---------------
ETLKLQQLVENIDKATTDPNECLICHRVLSCQSSLKM-----------HYRTHTGERPFQ
CKICGRAFSTK--------GNLKTHLGVHRTNTSIKTQHSCPICQKKFTNAVMLQQHIRM
HMGGQIPNTPLPENPCDFTGSEPMTVGENGSTGAICHDDVIESIDVEEVSSQEAPSSSSK
VPTPLPSIHSASPTLGFAMMASLDAPGKVGPAPFNLQRQGSRENGSVESDGLTNDSSSLM
GDQEYQSRSPDILETTSFQALSPA------------NSQAESIKSKSPDAGSKAESSENS
RTEMEGRSSLPSTFIRAPPTYVKVEVPGTF--VGPSTLSPGMTPLLAAQPRRQAKQHGCT
RCGKNFSSASALQIHERTHTGEKPFVCNICGRAFTTKGNLKVHYMTHGANN---NSARRG
RKLAIENTMALLGTDGKRVSEIFPKEILAPSVNVDPVVWNQYTSMLNGGLAVKTNEISVI
QSGGVPTLPVSLGATSVVNNATVSKMDGSQSGISADVEKPSATDGVPKHQFPHFLEENKI
AVS-------------------------------
>gi|28195386|ref|NP_003097.1| sex-determining region Y-box 2 [Homo sapiens]
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------MYNMMETELKPPGPQQTSGGGGGNSTAAAAGGNQ---------
--------------KNSPDR---VKRPMNA--FMVWS-------RGQRRKMAQENPKMHN
SEISK----------------------------------RLGAEWKLLSETEKRPFIDEA
----------------------KRLRALHMKEHPDYKYRPRRKT----------------
----------------------------------------KTLMKKDKYT----------
-------------------------------LPGGLLAPGGNSMASGV----------GV
GA-------GLGAGVNQRMDSYAHMNGWSNGSY---------------------------
------------------------------------------------------------
-----------------------------SMMQDQLGYPQHPGLN---------------
---------------------------------------------------------AHG
AAQMQPMHRYD---------------------VSALQYN---------------------
------------------------------------------------------------
---------------------------------------SMTSSQTYMNGSPTYSMS---
----------YSQQGTPGMALGSM------------GSVVKSEASSSPPVVTSSSHSRAP
CQAGDLRDMISM------------------------------------------------
-------------------------------------------YLPGAEV----PEPAAP
SRLHMSQHYQSGPVPGTAINGTLPLSHM--------------------------------
------------------------------------------------------------
----------------------------------
>gi|62718869|emb|CAG25892.1| Pumilio homolog [Dugesia japonica]
----------MSDFHENTTERNPSGINPNVATCQIANSSIYNPLGQVSTVISNVPNGPYY
SSSFVYSDD-------------------------WSMPGLS-------------------
-LSNTTEQLTRQISQLSYDDHSAYWPPHLSMPLSGDNRTWDTSENSISQPIPMHPGRRDT
LGNESGSFM---------------------------------------------------
------------------------------------------------SPISKEMVALGM
QVVNKVLSSSPGTGVMCRSDIMENFYNNPSSNFGYSNGNAQPFPQSPPHYYLPSSQLYQ-
--------------PSTLCG---TPENSQV--FGCNN-------QQNQSISQQPQQQSSA
NQQFFDPAIIAASFSNA----------------------GQGYPPQQQAPQGLPPPPGLA
---------------------PSHSDYMTGEPTSPLHNKQPDEEQNQYIWSPGTNNGMVH
DFMGGNPGPTY-----------------------------GYHQQAPLYD-----RPTSA
LPTQQLYASQNGTLHHGTQTSQIQNQSAAAALFARSLYLAALGSGHVP----------PA
TQQMAPQQQPPSLVPDALHTLTSMLAHGSNSYGQQ-------------PQQQPNFPSSQN
NLIGQNQAALSALSAAMSGYFLSPQIGTHAPPPTQQFSVMPGSNPTMLGAPQPSHTLMPA
TGSQLISHQGNK-----------------PMQSGYKGVVGNLKDGVTRSRLLEDFRANRL
TTLTLQDISGHVVEFAQDQHGSRFIQQ--------KL-----------QESSHNEKTMVF
REILPQCYSLM--------TDVFGNYVIQRFFDLGTPEQ---------------IQILGD
RIRNQVLQLSLQMYGCRVIQKALETVSK------VTQINIVRELEGSVIKCVKDQNGNHV
VQKCVECVPPEH--LDFIIDAFKDNVYSLSTHSY-----GCRVIQRILEHCTPEQTAPIL
AELHHFT---EELVKDQYGNYVIQ------------HVLE---HGKTEDKSKIVNLLRGR
IVELSIHKFASNVVEKAVAHATRQERQALINEVLQDSIPVSASNAIMRTADVSGVVYGSE
TDGSDTDGGGSVQRESVLYWMMKDQFAN---------------YVIQKMLD---VAEQPM
RKELMPKINPHLGSLRKSPSGKHIINKM-----------EKYYMKTNQDLGILSSNSGMA
CVGHM-------------------------------------------------------
----------------------------------
>gi|28573153|ref|NP_788604.1| pumilio, isoform E [Drosophila melanogaster]
------------MVVLET--------------------------------ASALLGGP--
----------------------------------YAQGAPA-------------------
--LKMVQKRY-----------IGLHHWLGPI------RSKELKEH---------IVSDDV
LS-----------------------------------------LAFNHN-----------
------------------------------------------------------------
----------------------QQLFRSQNPGLAAVATNAAAAAAAAA----AATSAAS-
--------------AAAAVG---APPVPNG--SLQQS-------QQQQQQQQQQQQQQQM
HMAAASQQFLAAQQQAQN------AAYAA----------QQATSYVINPGQEAAPYMGMI
AAAQMPYYGVAPWGMYPGNLIPQQGT----QPRRPLTPSQQGAENQPYQVIPAFLDHTGS
LLMGGPRTGTPMRLVSPAPVLVPPGATRAGPPPPQGPQLYQPQPQTAQQN-LYSQQNGSS
VGGLALNTSSLTGRRDSFDRSTSAFSPSTMDYTSSGVAAAANAVNSTV----------AQ
AA------AAAAAAAAARGKWPGAMSGAASGAYGALGAGNASASPLGAPITPP--PSAQS
CLLGSRAPGAESRQRQQQQQQLAA-VGLPATAAAAQAAVAAAANNMFGSNSSIFSNPLAI
PGTAAVAAAAAAAAAANSRQVAATAAAAAAVAAAAGGVGGAPQPG--RSRLLEDFRNQRY
PNLQLRDLANHIVEFSQDQHGSRFIQQ--------KL-----------ERATAAEKQMVF
SEILAAAYSLM--------TDVFGNYVIQKFFEFGTPEQ---------------KNTLGM
QVKGHVLQLALQMYGCRVIQKALESISP------EQQQEIVHELDGHVLKCVKDQNGNHV
VQKCIECVDPVA--LQFIINAFKGQVYSLSTHPY-----GCRVIQRILEHCTAEQTTPIL
DELHEHT---EQLIQDQYGNYVIQ------------HVLE---HGKQEDKSILINSVRGK
VLVLSQHKFASNVVEKCVTHATRGERTGLIDEV---------------------------
----------CTFNDNALHVMMKDQYAN---------------YVVQKMID---VSEPTQ
LKKLMTKIRPHMAALRKYTYGKHINAKL-----------EKYYMKITNPITVGTG-----
-AGGVPAASSAAAVSSGATSASVTACTSGSSTTTTSTTNSLASPTICSVQENGSAMVVEP
SSPDASESSSSVVSGAVNSSLGPIGPPTNGNVVL
>gi|45551850|ref|NP_731316.2| pumilio, isoform B [Drosophila melanogaster]
------MMKLLHDFILDARTAEDVALTQEMITTSTAKKLWEKSDGK--GVSSSTPGGPLH
PLQIPGIGDPSSVWKDHTWSTQGENILVPPPSRAYAHGGASDTSNSGNAGILSPR---DS
TCAKVVEYVFSGSPTNKDSSLSGLEPHLRNLKFDDNDKSRDDKEKANSPFDTNGLKKDDQ
VTNSNGVVNGIDDDKGFNRTPGSRQPSPAEESQPRPPNLLFPPLPFNHMLMDHGQGMGGG
LGGVVGSGNGVGGGSGGGGAGGAYAAHQQMAAQMSQLQPPMMNGVGGGMPMAAQSPMLNH
QAAGPNHMESPGNLLQQQNFDVQQLFRSQNPGLAAVATNAAAAAAAAA----AATSAAS-
--------------AAAAVG---APPVPNG--SLQQS-------QQQQQQQQQQQQQQQM
HMAAASQQFLAAQQQAQN------AAYAA----------QQATSYVINPGQEAAPYMGMI
AAAQMPYYGVAPWGMYPGNLIPQQGT----QPRRPLTPSQQGAENQPYQVIPAFLDHTGS
LLMGGPRTGTPMRLVSPAPVLVPPGATRAGPPPPQGPQLYQPQPQTAQQN-LYSQQNGSS
VGGLALNTSSLTGRRDSFDRSTSAFSPSTMDYTSSGVAAAANAVNSTV----------AQ
AA------AAAAAAAAARGKWPGAMSGAASGAYGALGAGNASASPLGAPITPP--PSAQS
CLLGSRAPGAESRQRQQQQQQLAA-VGLPATAAAAQAAVAAAANNMFGSNSSIFSNPLAI
PGTAAVAAAAAAAAAANSRQVAATAAAAAAVAAAAGGVGGAPQPG--RSRLLEDFRNQRY
PNLQLRDLANHIVEFSQDQHGSRFIQQ--------KL-----------ERATAAEKQMVF
SEILAAAYSLM--------TDVFGNYVIQKFFEFGTPEQ---------------KNTLGM
QVKGHVLQLALQMYGCRVIQKALESISP------EQQQEIVHELDGHVLKCVKDQNGNHV
VQKCIECVDPVA--LQFIINAFKGQVYSLSTHPY-----GCRVIQRILEHCTAEQTTPIL
DELHEHT---EQLIQDQYGNYVIQ------------HVLE---HGKQEDKSILINSVRGK
VLVLSQHKFASNVVEKCVTHATRGERTGLIDEV---------------------------
----------CTFNDNALHVMMKDQYAN---------------YVVQKMID---VSEPTQ
LKKLMTKIRPHMAALRKYTYGKHINAKL-----------EKYYMKITNPITVGTG-----
-AGGVPAASSAAAVSSGATSASVTACTSGSSTTTTSTTNSLASPTICSVQENGSAMVVEP
SSPDASESSSSVVSGAVNSSLGPIGPPTNGNVVL
>gi|110625918|ref|NP_082292.1| Nanog homeobox [Mus musculus]
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------------------MSVGL
PG----------------------------------------------------------
------------------------------------------------------------
----------------------PHSLPSSEEASNSGNASSMPAVFHPENYSCLQGSA---
-----------------------TEMLCTE--AASPR-------PSSEDLPLQGSPDSST
SPKQKLSSPEADKGPEEEENKVLA---------------RKQKMRTVFSQAQLCALKDRF
----------------------QKQKYLSLQQMQELSSILNLSYKQVKTWF---------
----------------------------------------QNQRMKCKRW----------
--------------------------------QKNQWLKTSNGLIQKG------------
--------SAPVEYPSIHCSYPQGYLVNASGSLSMWG-----------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------------------S
QTWTNPTWSSQ---------------------TWTNPTW---------------------
------------------------------------------------------------
------------------------------------------NNQTWTNPTWSSQAWTA-
----------QSWNGQPWNA--------------------------APLHNFGEDFLQPY
VQLQQNFSASDLEV----------------------------------------------
-------------------------------------------NLEATRESHAHFSTPQA
LELFLNYSVTPPGEI---------------------------------------------
------------------------------------------------------------
----------------------------------
>gi|18398572|ref|NP_565429.1| WUS (WUSCHEL); DNA binding / transcription factor [Arabidopsis thaliana]
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------------------MEPP-
------------------------------------------------------------
------------------------------------------------------------
----------------------QHQHHHHQADQESGNNNN--------------------
--------------NKSGSG---GYTCRQT--STRWT-------PTTEQ-----------
---------------------------------------IKILKELYYNNAIRSPTADQI
-----------------------------QKITARLRQFGKIEGKNVFYWF---------
----------------------------------------QNHKARERQK----------
------------KRFNGTNMTTPSSSPNSVMMAANDHYHPLLHHHHGV----------PM
QR--------PANSVNVKLNQDHHLYHHNK------------------------------
------------------------------------------------------------
-----------------------------PYPSFNNGNLNHASSG---------------
----------------------------------------------------------TE
CGVVNASNGYM------------------SSHVYGSMEQ---------------------
------------------------------------------------------------
---------------------------------------DCSMNYNNVGGGWANMD----
----------HHYSSAPYNFFDRA------------KPLF-GLEGHQEEEECGGDAYLEH
RRTLPLFPMHGEDHINGGSGAI--------------------------------------
-------------------------------------------WKYGQSE----VRPCAS
LELRLN------------------------------------------------------
------------------------------------------------------------
----------------------------------
>gi|30681653|ref|NP_187735.2| WOX5 (WUSCHEL-related homeobox 5); transcription factor [Arabidopsis thaliana]
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------MSFSVKGRSLRGNNNGGT-------------------
---------------------------GTK--CGRWN-------PTVE------------
---------------------------------------QLKILTDLFRAGLRTPTTDQI
-----------------------------QKISTELSFYGKIESKNVFYWF---------
----------------------------------------QNHKARERQK----------
------------------------------------------------------------
-------------RRKISIDFDHHHHQPSTRD----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------VFEISEE---------------------
------------------------------------------------------------
---------------------------------------DCQEEEKVI------------
----------ETLQLFPVNSFEDS------------NSKV------DKMRARGNNQYREY
IRETTTTSFSP-------------------------------------------------
-------------------------------------------YSSCGAE----MEHPPP
LDLRLSFL----------------------------------------------------
------------------------------------------------------------
----------------------------------