This workflow performs a generic protein sequence analysis. In order to do that a novel protein sequence enters into the software along with a list of known protein identifiers chosen by the biologist to perform a homology search, followed by a multiple sequence alignment and finally a phylogenetic analysis. Plots an unrooted tree diagram http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_tree_drawing.fdrawtree Protein distance algorithm http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_molecular_sequence.fprotdist Plots a cladogram- or phenogram-like rooted tree diagram http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_tree_drawing.fdrawgram Phylogenies from distance matrix by N-J or UPGMA method n http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_distance_matrix.fneighbor Majority-rule and strict consensus tree http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_consensus.fconsense Bootstrapped sequences algorithm yes no p no http://www.ebi.ac.uk/soaplab/emboss4/services/phylogeny_molecular_sequence.fseqboot Enter a novel protein sequence. e.g. AITRRVACLDGVNTATNAACCALFAVRDDIQQNL FDGGECGEEVHESLRLTFHDAIGISPSLAATGKFGG GGADGSIMIFDDIEPNFHANNGVDEIINAQKPFVAK HNMTAGDFIQFAGAVGVSNCPGAPQLSFFLGRPA