Hi!
Is it possible to use showfeat with only annotations (*.gbs files in NCBI)? I tried using it with the following command:
showfeat -pos -matchtype mRNA -width 0 mm_ref_chr1.gbs
But ended up with a whole lot of warnings and error, part of which is shown below:
....
Warning: bad /protein_id value 'NP_659045.2'
Warning: NT_078297: Bad value 'NP_659045.2' for tag '/protein_id'
Warning: Sequence 'genbank::mm_ref_chr1.gbs:NT_078297' has zero length, ignored
Error: Unable to read sequence 'mm_ref_chr1.gbs'
Shrish
Dr. Shrish Tiwari
E503, Centre for Cellular and Molecular Biology
Uppal Road, Hyderabad - 500 007, INDIA
Phone: 91-40-27192777
Alternate email: shrish.geo@yahoo.com