Hi!
I used the following command to extract only positions of CDS from gbk files:
showfeat -pos -matchtype CDS -width 0
But I noticed that the program does not extract positions of CDS that lie on the complementary strand, e.g. CDS             complement(5683..6459) did not show up in the resultant file. Any ideas on how I can get showfeat to extract these positions too.
Shrish
Dr. Shrish Tiwari
E503, Centre for Cellular and Molecular Biology
Uppal Road, Hyderabad - 500 007, INDIA
Phone: 91-40-27192777
Alternate email: shrish.geo@yahoo.com