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Hi,
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I'm programming in EMBOSS 2.7.1 (not yet in EMBOSS 2.8.0) and I don't understand why my program does not work. I'm looking for the error since yesterday but I don't find it. The part of my program where is the problem is :
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<FONT COLOR="#0000ff"><FONT SIZE="2"> // obtention fin extremite terminale oligo gche</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> // mise sequence1 dans tableau</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> iterSeq1 = ajStrIter(res2->sequenceGche);</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> while (!ajStrIterDone(iterSeq1))</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> {</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> c = ajStrIterGetK(iterSeq1);</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> tabSeq1[i] = c;</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> i++;</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> ajStrIterNext(iterSeq1);</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> }</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> </FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> // Nucleotide extremite 3' de l'oligo gauche</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> Nuc3OligGche = tabSeq1[lenSeq1-1];</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> </FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> </FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> // obtention fin extremite terminale oligo dte </FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> // sequence2 dans tableau</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> iterSeq2 = ajStrIter(res2->sequenceDte);</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> while (!ajStrIterDone(iterSeq2))</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> {</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> d = ajStrIterGetK(iterSeq2);</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> tabSeq2[j] = d;</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> j++;</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> ajStrIterNext(iterSeq2);</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> }</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> </FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> </FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> // Nucleotide extremite 3' de l'oligo droite</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> Nuc3OligDte = tabSeq2[lenSeq2-1];</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> </FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> ajStrAssCI(&charT, "T",1);</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> ajStrAssCI(&charA, "A",1);</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> </FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> </FONT></FONT><FONT COLOR="#ff0000"><FONT SIZE="2">if ((ajStrMatchCaseC (charA,&Nuc3OligGche))||(ajStrMatchCaseC (charT,&Nuc3OligGche)))</FONT></FONT>
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<FONT COLOR="#ff0000"><FONT SIZE="2"> {</FONT></FONT>
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<FONT COLOR="#ff0000"><FONT SIZE="2"> ajFmtPrintF(outf, "oligo gche finit par A ou T \n");</FONT></FONT>
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<FONT COLOR="#ff0000"><FONT SIZE="2"> res2->score = res2->score - 1; </FONT></FONT>
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<FONT COLOR="#ff0000"><FONT SIZE="2"> }</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> </FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> </FONT></FONT><FONT COLOR="#008000"><FONT SIZE="2"> if ((ajStrMatchCaseC (charAbis,&Nuc3OligDte))||(ajStrMatchCaseC (charTbis,&Nuc3OligDte)))</FONT></FONT>
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<FONT COLOR="#008000"><FONT SIZE="2"> {</FONT></FONT>
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<FONT COLOR="#008000"><FONT SIZE="2"> ajFmtPrintF(outf, "oligo dte finit par A ou T \n");</FONT></FONT>
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<FONT COLOR="#008000"><FONT SIZE="2"> res2->score = res2->score - 1; </FONT></FONT>
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<FONT COLOR="#008000"><FONT SIZE="2"> }</FONT></FONT>
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<FONT COLOR="#0000ff"><FONT SIZE="2"> </FONT></FONT>
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There isn't any problem with the first buckle 1 (see in red) but my program does'nt go is the buckle 2 (see in green) as it should do it and as it do with the buckle 1. Is someone can help me, please. I have no more idea now and don't know what to do. May be my problem will appear very clear for someone. I hope it, in fact. :-)
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Thanks,
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Carole Louis
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