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question</title></head><body>
<div><font face="Arial" size="+1">Donīt worry about the firsts
warnings ( is a common problem with the java interface an the Red Hat,
for example ).</font></div>
<div><font face="Arial" size="+1"><br></font></div>
<div><font face="Arial" size="+1">About the java errors: it seems you
have a problem with the Tomcat or the Axis/SOAP
installation.</font></div>
<div><font face="Arial" size="+1"><br></font></div>
<div><font face="Arial" size="+1">- Tomcat is runnig for sure? you can
execute properly the examples from your own tomcat
installation?</font></div>
<div><font face="Arial" size="+1"><br></font></div>
<div><font face="Arial" size="+1">- Look at the catalina.out logs
under the tomcat installation, it gives you lot of information; look
what is the port reserved for tomcat, other process are runnig on the
same port?.</font></div>
<div><font face="Arial" size="+1"><br></font></div>
<div><font face="Arial" size="+1">- If you have to run again the
install script:<font color="#000000"> check out the java environment
variable</font>.</font></div>
<div><font face="Arial" size="+1"><br></font></div>
<div><font face="Arial" size="+1">-<font color="#000000"> Install
script:</font></font></div>
<div><font face="Arial" size="+1" color="#000000">"The script
asks for the locations of the EMBOSS download, EMBOSS installation,
Tomcat, Axis and Java directories. Axis is added to the Tomcat
(copying soap.war to $TOMCAT/webapps/ )." Copy the soap.war
again... and restart.</font></div>
<div><font face="Arial" size="+1" color="#000000">"The Jemboss
server classes are added to the Tomcat CLASSPATH
($TOMCAT/webapps/axis/WEB-INF/classes/)".</font><font
face="Arial" size="+1"> Look at the classes directory, and check the
symbolic links, they are pointing the correct files? Maybe
is a path problem.</font></div>
<div><font face="Arial" size="+1"><br></font></div>
<div><font face="Arial" size="+1">- Check out the jemboss.properties
file under<font color="#000000">
$EMBOSS_ROOT/share/EMBOSS/jemboss/resource/jemboss.properties</font>.</font
></div>
<div><font face="Arial" size="+1"><br></font></div>
<div><font face="Arial" size="+1">Hope this helps, and excuse me, my
english is terrible.</font></div>
<div><font face="Arial" size="+1"><br></font></div>
<div><font face="Arial" size="+1">David.</font></div>
<div><font face="Arial" size="+1"><br></font></div>
<blockquote type="cite" cite><font face="Arial" size="+1">I have been
trying to install jemboss in client-server mode on a redhat<br>
linux box (7.3 and 8.0) without much success. I can get the
standalone<br>
version working on the 8.0 box (haven't tried on the 7.3 box) but
the<br>
trouble seems to start when I want to go client-server.<br>
<br>
I have the following distributions:<br>
EMBOSS-2.6.0<br>
j2sdk1.4.0_01<br>
jakarta-tomcat-4.0.4<br>
xml-axis-10<br>
<br>
I run the install-jemboss-server.sh script as myself, and I also own
the<br>
jakarta and xml-axis directories. Everything seems to go fine during
the<br>
installation. Tomstart appears to start tomcat as I can get the tomcat
web<br>
page saying it is installed. When I run runJemboss.csh, I get a bunch
of<br>
error messages spewing out on the terminal window. I login using my
linux<br>
username and password and when I try to run anything I get a window
that<br>
says there is a problem connecting to the server. I pasted a portion
of<br>
the error messages below.<br>
<br>
Does anyone have any idea what I could be doing wrong? I like the<br>
standalone interface and would like to get the client-server
version<br>
working so the people in our group can use it from their pc.<br>
<br>
Thanks,<br>
<br>
Kevin<br>
<br>
=======================================<br>
<br>
[battaile@linux3 jemboss]$ ./runJemboss.csh<br>
[1] 4093<br>
[battaile@linux3 jemboss]$ Warning: Cannot convert string<br>
"<Key>Escape,_Key_Cancel" to type VirtualBinding<br>
Warning: Cannot convert string "<Key>Home,_Key_Begin"
to type VirtualBinding<br>
Warning: Cannot convert string "<Key>F1,_Key_Help" to
type VirtualBinding<br>
Warning: Cannot convert string "Shift<Key>F10,_Key_Menu"
to type<br>
VirtualBinding<br>
Warning: Cannot convert string "<Key>F10,Shift_Key_Menu"
to type<br>
VirtualBinding<br>
Warning: Cannot convert string "<Key>KP_Enter,_Key_Execute"
to type<br>
VirtualBinding<br>
Warning: Cannot convert string
"Alt<Key>Return,Alt_Key_KP_Enter" to type<br>
VirtualBinding<br>
calling the server<br>
Mar 13, 2003 9:16:57 AM org.apache.axis.client.Call invoke<br>
INFO: Mapping Exception to AxisFault<br>
AxisFault<br>
faultCode: {http://xml.apache.org/axis/}Server.userException<br>
faultString: java.lang.NullPointerException<br>
faultActor: null<br>
faultDetail:<br>
stackTrace:
java.lang.NullPointerException<br>
at<br>
org.emboss.jemboss.programs.RunEmbossApplication.isProcessStdout(RunE<span
></span>mbossApplication.java:71)<br>
at<br>
org.emboss.jemboss.server.JembossAuthServer.show_db(JembossAuthServer<span
></span>.java:326)<br>
at
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)<br>
at<br>
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.<span
></span>java:39)<br>
at<br>
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAcces<span
></span>sorImpl.java:25)<br>
at
java.lang.reflect.Method.invoke(Method.java:324)<br>
at<br>
org.apache.axis.providers.java.RPCProvider.invokeMethod(RPCProvider.j<span
></span>ava:372)</font></blockquote>
<blockquote type="cite" cite><font face="Arial"
size="+1">
at</font></blockquote>
<blockquote type="cite" cite><font face="Arial"
size="+1"
>org.apache.axis.providers.java.RPCProvider.processMessage(RPCProvide<span
></span>r.java:292)</font></blockquote>
<blockquote type="cite" cite><font face="Arial"
size="+1">
at</font></blockquote>
<blockquote type="cite" cite><font face="Arial"
size="+1"
>org.apache.axis.providers.java.JavaProvider.invoke(JavaProvider.java<span
></span>:276)</font></blockquote>
<blockquote type="cite" cite><font face="Arial"
size="+1">
at</font></blockquote>
<blockquote type="cite" cite><font face="Arial"
size="+1"
>org.apache.axis.strategies.InvocationStrategy.visit(InvocationStrate<span
></span>gy.java:71)<br>
at
org.apache.axis.SimpleChain.doVisiting(SimpleChain.java:156)<br>
at
org.apache.axis.SimpleChain.invoke(SimpleChain.java:126)<br>
at<br>
org.apache.axis.handlers.soap.SOAPService.invoke(SOAPService.java:437)<br
>
at
org.apache.axis.server.AxisServer.invoke(AxisServer.java:316)<br>
at<br>
org.apache.axis.transport.http.AxisServlet.doPost(AxisServlet.java:70<span
></span>1)<br>
at
javax.servlet.http.HttpServlet.service(HttpServlet.java:760)<br>
at<br>
org.apache.axis.transport.http.AxisServletBase.service(AxisServletBas<span
></span>e.java:335)<br>
at
javax.servlet.http.HttpServlet.service(HttpServlet.java:853)<br>
at<br>
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Appl<span
></span>icationFilterChain.java:247)<br>
at<br>
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationF<span
></span>ilterChain.java:193)<br>
at<br>
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperV<span
></span>alve.java:243)<br>
at<br>
org.apache.catalina.core.StandardPipeline.invokeNext(StandardPipeline<span
></span>.java:566)<br>
at<br>
org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.jav<span
></span>a:472)<br>
at<br>
org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:943)<br
>
at<br>
org.apache.catalina.core.StandardContextValve.invoke(StandardContextV<span
></span>alve.java:190)<br>
at<br>
org.apache.catalina.core.StandardPipeline.invokeNext(StandardPipeline<span
></span>.java:566)<br>
at<br>
org.apache.catalina.valves.CertificatesValve.invoke(CertificatesValve<span
></span>.java:246)<br>
at<br>
org.apache.catalina.core.StandardPipeline.invokeNext(StandardPipeline<span
></span>.java:564)<br>
at<br>
org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.jav<span
></span>a:472)<br>
at<br>
org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:943)<br
>
at<br>
org.apache.catalina.core.StandardContext.invoke(StandardContext.java:<span
></span>2347)<br>
at<br>
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.j<span
></span>ava:180)<br>
at<br>
org.apache.catalina.core.StandardPipeline.invokeNext(StandardPipeline<span
></span>.java:566)<br>
at<br>
org.apache.catalina.valves.ErrorDispatcherValve.invoke(ErrorDispatche<span
></span>rValve.java:170)</font></blockquote>
<div><font face="Arial" size="+1"><br></font></div>
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