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<DIV><FONT face=Arial color=#0000ff size=2><SPAN
class=973571913-05122002>Hi,</SPAN></FONT></DIV>
<DIV><FONT face=Arial color=#0000ff size=2><SPAN
class=973571913-05122002></SPAN></FONT> </DIV>
<DIV><FONT face=Arial color=#0000ff size=2><SPAN class=973571913-05122002>Thanks
for the tip. I tried the code change to emma as suggested by David
Starks-Browning, and that seemed to fix my problem. Always good to keep an
eye on the EOL types though. In fact, many editors have built in functions
to do that conversion, and have little reminders in the status bar. I
configured my Ultraedit toolbar, making that function more readily accessible in
my toolbar ;-)</SPAN></FONT></DIV>
<DIV><FONT face=Arial color=#0000ff size=2><SPAN
class=973571913-05122002></SPAN></FONT> </DIV>
<DIV><FONT face=Arial color=#0000ff size=2><SPAN
class=973571913-05122002>-Mat</SPAN></FONT></DIV>
<BLOCKQUOTE dir=ltr
style="PADDING-LEFT: 5px; MARGIN-LEFT: 5px; BORDER-LEFT: #0000ff 2px solid; MARGIN-RIGHT: 0px">
<DIV class=OutlookMessageHeader dir=ltr align=left><FONT face=Tahoma
size=2>-----Original Message-----<BR><B>From:</B> Sebastian Bassi
[mailto:sebastian.bassi@ar.advantaseeds.com]<BR><B>Sent:</B> Thursday,
December 05, 2002 7:05 AM<BR><B>To:</B> Wiepert, Mathieu;
emboss@embnet.org<BR><B>Subject:</B> RE: emma or clustalw
problem?<BR><BR></FONT></DIV>
<DIV>
<DIV><SPAN class=860422319-04122002><FONT face=Arial color=#0000ff
size=2>Hi,</FONT></SPAN></DIV>
<DIV><SPAN class=860422319-04122002><FONT face=Arial color=#0000ff
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=860422319-04122002><FONT face=Arial><FONT color=#0000ff><FONT
size=2>Sometimes the problems like this occurs when the program is expecting a
UNIX formated text file and you put a windows style text file. I have had the
inverse problem, I have downloaded a genome fasta file from the NCBI and the
program I was using to handle it was unable to open it, since it expected a
windows style text file and the downloaded file was with Unix format.<SPAN
class=133372819-04122002> The EOL character is
different.</SPAN></FONT></FONT></FONT></SPAN></DIV>
<DIV><SPAN class=860422319-04122002><FONT face=Arial><FONT color=#0000ff><FONT
size=2><SPAN class=133372819-04122002>There's a Windows program called
CONVERT, it works as a pop up menu, just click the file with secondary button
and select CONVERT TO (3 options, UNIX, PC or MAC). If you are using UNIX,
there are some comand line utilities to do this (in Solaris is already built
in).</SPAN></FONT></FONT></FONT></SPAN></DIV>
<DIV><SPAN class=860422319-04122002><FONT face=Arial><FONT color=#0000ff><FONT
size=2><SPAN class=133372819-04122002>I don't know if EMBOSS have problem with
this.</SPAN></FONT></FONT></FONT></SPAN></DIV></DIV>
<BLOCKQUOTE dir=ltr style="MARGIN-RIGHT: 0px"><FONT face=Arial color=#0000ff
size=2>
<DIV> </DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>ERROR: Could not open sequence file 5511A</DIV>
<DIV> </DIV>
<DIV><BR>No. of seqs. read = -1. No alignment!<BR>Error: failed to open
filename 5511B<BR>Problem writing out EMBOSS alignment fileSegmentation
fault<BR></FONT></DIV>
<DIV><FONT face=Arial color=#0000ff size=2><SPAN
class=312123816-04122002>-mat</SPAN></FONT></DIV>
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