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<DIV><SPAN class=182022511-06092002><FONT face=Arial size=2>Dear
all,</FONT></SPAN></DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial size=2>I am having trouble
indexing refseq (release in genbank format from yesterday). During indexing I
get a lot of errors complaining about duplicate ids:</FONT></SPAN></DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial size=2>Index a flat file
database<BR>Warning: Duplicate ID skipped: '0610012A05Rik'<BR>Warning: Duplicate
ID skipped: '0610043B10Rik'<BR>Warning: Duplicate ID skipped:
'1110004B13Rik'<BR>Warning: Duplicate ID skipped: '1110020A23Rik'<BR>Warning:
Duplicate ID skipped: '14'<BR>Warning: Duplicate ID skipped: '14'<BR>Warning:
Duplicate ID skipped: '14'<BR>Warning: Duplicate ID skipped: '14'<BR>Warning:
Duplicate ID skipped: '1500000C01Rik'</FONT></SPAN></DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial
size=2>...</FONT></SPAN></DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial
size=2>...</FONT></SPAN></DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial size=2>After indexing, I am
not able to retrieve a lot of entries which are present in the flatfile,
i.e.:</FONT></SPAN></DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial
size=2>NM_000303<BR>NM_005693</FONT></SPAN></DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial
size=2>...</FONT></SPAN></DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial
size=2>...</FONT></SPAN></DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial size=2>Any suggestions
would be greatly appreciated. I noticed that one of the changes in version 2.4.1
(I am using 2.5.0) addressed fixing the indexing of refseq.
</FONT></SPAN></DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial size=2>Best
regards</FONT></SPAN></DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=182022511-06092002><FONT face=Arial
size=2>Sascha</FONT></SPAN></DIV></BODY></HTML>