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<DIV>Hi,<FONT size=3><BR><BR></FONT>I have installed the <STRONG><FONT
color=#ff0000>EMBOSS version 2.3.1.</FONT></STRONG></DIV>
<DIV>I have made an analisys with the fuzznuc program in this
way:<BR></DIV>
<DIV>$ fuzznuc<BR>Nucleic acid pattern search<BR>Input sequence(s):
mysequence<BR>Search pattern: acgtggac<BR>Number of mismatches [0]: 2<BR>Output
report [af049916.fuzznuc]:</DIV><FONT face=Arial size=2></FONT><FONT face=Arial
size=2></FONT><FONT face=Arial size=2></FONT><FONT face=Arial
size=2></FONT><FONT face=Arial size=2></FONT><FONT face=Arial
size=2></FONT><FONT face=Arial size=2></FONT><FONT face=Arial
size=2></FONT><FONT face=Arial size=2></FONT><FONT face=Arial
size=2></FONT><FONT face=Arial size=2></FONT>
<DIV><FONT face=Arial size=2></FONT><FONT face=Arial size=2></FONT><FONT
face=Arial size=2></FONT><FONT face=Arial size=2></FONT><FONT face=Arial
size=2></FONT><FONT face=Arial size=2></FONT><FONT face=Arial
size=2></FONT><FONT face=Arial size=2></FONT><FONT face=Arial
size=2></FONT><FONT face=Arial size=2></FONT><FONT face=Arial
size=2></FONT><FONT face=Arial size=2></FONT><FONT face=Arial
size=2></FONT><BR>The output file is:<BR><BR>$ more
af049916.fuzznuc<BR> </DIV>
<DIV><FONT size=2>
AF049916 148
ATGTGGAT<BR>
AF049916 416
ACGTGGGC<BR>
AF049916 845
TCTTGGAC<BR>
AF049916 1722
ACGTGGGC<BR>
AF049916 2007
ACGTGTGC<BR>
AF049916 2257
ACATGTAC<BR>
AF049916 3183
ACGTAAAC<BR>
AF049916 3377
TCGTGGAA<BR>
AF049916 3914
ACGTGCAC<BR>
AF049916 4058
ACATGGAC<BR>
AF049916 4317
ACGTAAAC<BR>
AF049916 4534
TCGTGGAA<BR>
AF049916 4906
ACATGGAA<BR>
AF049916 5877
ACATGGAC<BR>
AF049916 5954
TCCTGGAC<BR>
AF049916 6024
CCCTGGAC<BR>
AF049916 6094
ACGTGGCA<BR>
AF049916 6127
GCCTGGAC<BR>
AF049916 6148
ACATGGAC<BR>
AF049916 6160
TCGTGGAC<BR>
AF049916 6208 ACGTCGAC</FONT></DIV>
<DIV><FONT size=2></FONT> </DIV>
<DIV><FONT size=2>As you can see there is no name for each coloumn of the table;
moreover this output is different from that you can see in the EMBOSS HELP, i.e.
for example:</FONT></DIV>
<DIV><FONT size=2></FONT> </DIV>
<DIV><PRE>########################################
# Program: fuzznuc
# Rundate: Thu Apr 11 13:34:06 2002
# Report_file: stdout
########################################
#=======================================
#
# Sequence: HHTETRA from: 1 to: 1272
# HitCount: 2
#
# Pattern: aagctt
# Mismatch: 0
# Complement: No
#
#=======================================
Start End Mismatch Sequence
1 6 . aagctt
1267 1272 . aagctt
#---------------------------------------
#---------------------------------------
</PRE><PRE><FONT face="Times New Roman">I have tried to use the option -rformat seqtable, like suggested in the help, but the the program says:</FONT></PRE></DIV>
<DIV>" EMBOSS An error in ajacd.c at line 11225:<BR>unknown
qualifier -rformat"</DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV>Have you got any idea about this problem? Is the matter in the EMBOSS
version?</DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV>Thanks</DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV>Graziano<BR></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV>--------------------------------------------------------------------------------------<BR><FONT
size=2>Graziano Pappadą<BR><FONT color=#000000><A
href="mailto:areagp61@yahoo.it">areagp61@yahoo.it</A></FONT></FONT><BR>--------------------------------------------------------------------------------------<BR></DIV></BODY></HTML>