From hstoelting at esplora.de Fri Nov 9 11:28:08 2001 From: hstoelting at esplora.de (Heiko =?iso-8859-15?q?St=F6lting?=) Date: Fri, 9 Nov 2001 17:28:08 +0100 Subject: emboss and mass spectrometry Message-ID: <01110917280801.01914@Altschul> Hi anybody, I'm a new EMBOSS user und would like to know if there's any proteomics program within the package (2.0.1)? In detail, I want to perform large scale genome database searches with sequence tags obtained from de novo mass spectrometry following the method published by K?ser et al. in Proteomics 1, 2001. The syntax would be: (mass1)TAG(mass2) where mass1 and mass2 are the N-/ C-terminal start/endmasses of a single peptide after tryptic digestion of the mother protein. PC-and Mac-Version programs that I've got (Bioanalyst, PeptideSearch) are obviously limited in the size of a single database entry (approx 1500 characters, much to small for a genome...). Now I'm looking for a program that could perform those database searches without such limitatioins. I think, I would need database entry sizes of about 1MB or even more. Thanks in advance for any idea, Heiko -- Dr. H. St?lting Esplora GmbH Petersentstr. 22 64287 Darmstadt Tel.: 06151-166768 From lljiba at uta.fi Tue Nov 13 04:02:57 2001 From: lljiba at uta.fi (Jinwei Bai) Date: Tue, 13 Nov 2001 11:02:57 +0200 Subject: about ajGraphNewPage() Message-ID: <5.0.2.1.0.20011113105427.009e90b0@imap.uta.fi> Hello! I tried to use the function ajGraphNewPage() to get an other page for my graphy output,the error message is: An error has been found: ERROR no space left more graphs in the multiple graph store An error has been found: ERROR no space left more graphs in the multiple graph store An error has been found: ERROR no space left more graphs in the multiple graph store *** PLPLOT ERROR *** pladv: Please call plinit first, aborting operation *** PLPLOT ERROR *** plcol0: Please call plinit first, aborting operation *** PLPLOT ERROR *** plcol0: Please call plinit first, aborting operation How can I do ? Thank you very much. Jinwei From kavithabekkari at yahoo.com Tue Nov 20 05:06:33 2001 From: kavithabekkari at yahoo.com (Kavitha Reddy) Date: Tue, 20 Nov 2001 02:06:33 -0800 (PST) Subject: request Message-ID: <20011120100633.39962.qmail@web14502.mail.yahoo.com> Sir, Iam very much interested in learning Emboss , but thru web i got little information and understanding, please kindly can you send any detailed information and if any tutorial you have, if any pay is needed i can pay .please try to consider my sincere request. thanking you kavitha bekkari __________________________________________________ Do You Yahoo!? Yahoo! GeoCities - quick and easy web site hosting, just $8.95/month. http://geocities.yahoo.com/ps/info1 From gd168 at sparqnet.net Tue Nov 27 22:41:39 2001 From: gd168 at sparqnet.net (gd168 at sparqnet.net) Date: Wed, 28 Nov 2001 03:41:39 +0000 (GMT) Subject: =?big5?Q?=A8=E7=BD=D0=A5=FE=B0=EA=A6U=AF=C5=BE=C7=AE=D5=C5T=C0=B3=C0=F4=ABO=A5=FE=AD=B1=A6^=A6=AC=AA=C5=A7X,=A8=C3=BD=D0=B1=C4=A5=CE=A6=B3=C0=F4=ABO=BC=D0=B3=B9=BB{=C3=D2=A4=A7=C0=F4=ABO=B9p=AEg=BA=D2=AF=BB=A7X=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@?= Kn1IsRUEB2me6sy2edLSsxRhwY Message-ID: <0shMLJ5wI5D@pavo.seed.net.tw> An HTML attachment was scrubbed... URL: http://lists.open-bio.org/pipermail/emboss/attachments/20011128/aa2677d0/attachment.html From econtact at defisc-immo.fr Wed Nov 28 19:38:01 2001 From: econtact at defisc-immo.fr (DEFISCIMMO) Date: Thu, 29 Nov 2001 01:38:01 +0100 Subject: INVESTISSEZ VOS IMPOTS Message-ID: **********EPARGNEZ VOS IMPOTS********************* Pour en savoir plus cliquez sur le lien suivant : www.defisc-immo.fr http://www.defisc-immo.fr/cgi-bin/s.pl?id=203375;p=lyon;end;/ --------------------------------------------------------------------------- INVESTIR FACILEMENT Loyers percus ? partir de + Economie d'imp?ts 200 F/mois - Remboursement des pr?ts = EPARGNE MINIMALE Ou comment, dans le cadre de la LOI BESSON, se constituer : - un patrimoine - un capital retraite - des revenus compl?mentaires gr?ce ? un LOCATAIRE et ? des ECONOMIES D'IMPOTS. * Plans d'investissement sur demande DEFISCIMMO info at defisc-immo.fr Nous vous invitons ? remplir le formulaire ? l'adresse http://www.defisc-immo.fr/cgi-bin/s.pl?id=203375;p=contact;end si vous ne souhaitez plus recevoir de messages cliquez sur le lien suivant http://www.defisc-immo.fr/contact/pages/mailing.htm ou r?pondez ? ce courrier en indiquant 'annulation' dans le sujet. From smcmahan at facstaff.wisc.edu Fri Nov 30 19:41:40 2001 From: smcmahan at facstaff.wisc.edu (Scott McMahan) Date: Fri, 30 Nov 2001 18:41:40 -0600 Subject: Modifying existing programs Message-ID: <3C082744.1020802@facstaff.wisc.edu> I've modified pepstats.c (and necessary support files) to include the calculation of molar extinction coefficient at 280 and the expected A280 of a 1mg/ml solution. I've looked on the website, but couldn't find documentation about how to handle additions to existing applications. Could someone please point me in the right direction? -- Scott McMahan smcmahan at facstaff.wisc.edu From hstoelting at esplora.de Fri Nov 9 16:28:08 2001 From: hstoelting at esplora.de (Heiko =?iso-8859-15?q?St=F6lting?=) Date: Fri, 9 Nov 2001 17:28:08 +0100 Subject: emboss and mass spectrometry Message-ID: <01110917280801.01914@Altschul> Hi anybody, I'm a new EMBOSS user und would like to know if there's any proteomics program within the package (2.0.1)? In detail, I want to perform large scale genome database searches with sequence tags obtained from de novo mass spectrometry following the method published by K?ser et al. in Proteomics 1, 2001. The syntax would be: (mass1)TAG(mass2) where mass1 and mass2 are the N-/ C-terminal start/endmasses of a single peptide after tryptic digestion of the mother protein. PC-and Mac-Version programs that I've got (Bioanalyst, PeptideSearch) are obviously limited in the size of a single database entry (approx 1500 characters, much to small for a genome...). Now I'm looking for a program that could perform those database searches without such limitatioins. I think, I would need database entry sizes of about 1MB or even more. Thanks in advance for any idea, Heiko -- Dr. H. St?lting Esplora GmbH Petersentstr. 22 64287 Darmstadt Tel.: 06151-166768 From lljiba at uta.fi Tue Nov 13 09:02:57 2001 From: lljiba at uta.fi (Jinwei Bai) Date: Tue, 13 Nov 2001 11:02:57 +0200 Subject: about ajGraphNewPage() Message-ID: <5.0.2.1.0.20011113105427.009e90b0@imap.uta.fi> Hello! I tried to use the function ajGraphNewPage() to get an other page for my graphy output,the error message is: An error has been found: ERROR no space left more graphs in the multiple graph store An error has been found: ERROR no space left more graphs in the multiple graph store An error has been found: ERROR no space left more graphs in the multiple graph store *** PLPLOT ERROR *** pladv: Please call plinit first, aborting operation *** PLPLOT ERROR *** plcol0: Please call plinit first, aborting operation *** PLPLOT ERROR *** plcol0: Please call plinit first, aborting operation How can I do ? Thank you very much. Jinwei From kavithabekkari at yahoo.com Tue Nov 20 10:06:33 2001 From: kavithabekkari at yahoo.com (Kavitha Reddy) Date: Tue, 20 Nov 2001 02:06:33 -0800 (PST) Subject: request Message-ID: <20011120100633.39962.qmail@web14502.mail.yahoo.com> Sir, Iam very much interested in learning Emboss , but thru web i got little information and understanding, please kindly can you send any detailed information and if any tutorial you have, if any pay is needed i can pay .please try to consider my sincere request. thanking you kavitha bekkari __________________________________________________ Do You Yahoo!? Yahoo! GeoCities - quick and easy web site hosting, just $8.95/month. http://geocities.yahoo.com/ps/info1 From gd168 at sparqnet.net Wed Nov 28 03:41:39 2001 From: gd168 at sparqnet.net (gd168 at sparqnet.net) Date: Wed, 28 Nov 2001 03:41:39 +0000 (GMT) Subject: =?big5?Q?=A8=E7=BD=D0=A5=FE=B0=EA=A6U=AF=C5=BE=C7=AE=D5=C5T=C0=B3=C0=F4=ABO=A5=FE=AD=B1=A6^=A6=AC=AA=C5=A7X,=A8=C3=BD=D0=B1=C4=A5=CE=A6=B3=C0=F4=ABO=BC=D0=B3=B9=BB{=C3=D2=A4=A7=C0=F4=ABO=B9p=AEg=BA=D2=AF=BB=A7X=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@=A1@?= Kn1IsRUEB2me6sy2edLSsxRhwY Message-ID: <0shMLJ5wI5D@pavo.seed.net.tw> An HTML attachment was scrubbed... URL: From econtact at defisc-immo.fr Thu Nov 29 00:38:01 2001 From: econtact at defisc-immo.fr (DEFISCIMMO) Date: Thu, 29 Nov 2001 01:38:01 +0100 Subject: INVESTISSEZ VOS IMPOTS Message-ID: **********EPARGNEZ VOS IMPOTS********************* Pour en savoir plus cliquez sur le lien suivant : www.defisc-immo.fr http://www.defisc-immo.fr/cgi-bin/s.pl?id=203375;p=lyon;end;/ --------------------------------------------------------------------------- INVESTIR FACILEMENT Loyers percus ? partir de + Economie d'imp?ts 200 F/mois - Remboursement des pr?ts = EPARGNE MINIMALE Ou comment, dans le cadre de la LOI BESSON, se constituer : - un patrimoine - un capital retraite - des revenus compl?mentaires gr?ce ? un LOCATAIRE et ? des ECONOMIES D'IMPOTS. * Plans d'investissement sur demande DEFISCIMMO info at defisc-immo.fr Nous vous invitons ? remplir le formulaire ? l'adresse http://www.defisc-immo.fr/cgi-bin/s.pl?id=203375;p=contact;end si vous ne souhaitez plus recevoir de messages cliquez sur le lien suivant http://www.defisc-immo.fr/contact/pages/mailing.htm ou r?pondez ? ce courrier en indiquant 'annulation' dans le sujet.