From tchiang at bioinfo.sickkids.on.ca Thu May 17 14:42:23 2001 From: tchiang at bioinfo.sickkids.on.ca (Ted Chiang) Date: Thu, 17 May 2001 14:42:23 -0400 (EDT) Subject: application for pfam? Message-ID: Hi, Just wondering if EMBOSS has any program that will search a pfam database? similar to the idea of patmatmotifs for PROSITE? Ted ------------------------------------ T. Chiang Bioinformatics Supercomputing Centre ext. 7028 From ableasby at hgmp.mrc.ac.uk Thu May 24 14:17:44 2001 From: ableasby at hgmp.mrc.ac.uk (ableasby at hgmp.mrc.ac.uk) Date: Thu, 24 May 2001 19:17:44 +0100 (BST) Subject: EMBOSS 1.13.0 available Message-ID: <200105241817.TAA19754@bromine.hgmp.mrc.ac.uk> Several pre-2.0.0 library changes and application alterations plus a selection of bugfixes (e.g. prophet) and installation fixes (html files now install correctly). SHOWALIGN: multiple alignment display program. EMBOSSVERSION: reports the version of emboss being used. Note that the emboss.default file has been deleted from the acd directory and now appears as emboss.default.template in the applications directory. Alan From ableasby at hgmp.mrc.ac.uk Fri May 25 08:31:01 2001 From: ableasby at hgmp.mrc.ac.uk (ableasby at hgmp.mrc.ac.uk) Date: Fri, 25 May 2001 13:31:01 +0100 (BST) Subject: EMBOSS 1.13.1 Message-ID: <200105251231.NAA17288@bromine.hgmp.mrc.ac.uk> This cures an installation problem with 1.13.0 concerning the emboss.default.template file. Apologies for this automake oversight. Alan From luojc at plum.lsc.pku.edu.cn Fri May 25 09:21:16 2001 From: luojc at plum.lsc.pku.edu.cn (Jingchu Luo) Date: Fri, 25 May 2001 21:21:16 +0800 (CST) Subject: EMBOSS 1.13.1 In-Reply-To: <200105251231.NAA17288@bromine.hgmp.mrc.ac.uk> Message-ID: Dear Colleagues, Could I know if there is any public available program for DNA chip design? We plan to pick out fragments (50bp) from arabidopsis cDNAs. The candidate fragment should have less than 30% similarity with other fragments in the genome. Thanks. Jingchu From tchiang at bioinfo.sickkids.on.ca Thu May 17 18:42:23 2001 From: tchiang at bioinfo.sickkids.on.ca (Ted Chiang) Date: Thu, 17 May 2001 14:42:23 -0400 (EDT) Subject: application for pfam? Message-ID: Hi, Just wondering if EMBOSS has any program that will search a pfam database? similar to the idea of patmatmotifs for PROSITE? Ted ------------------------------------ T. Chiang Bioinformatics Supercomputing Centre ext. 7028 From ableasby at hgmp.mrc.ac.uk Thu May 24 18:17:44 2001 From: ableasby at hgmp.mrc.ac.uk (ableasby at hgmp.mrc.ac.uk) Date: Thu, 24 May 2001 19:17:44 +0100 (BST) Subject: EMBOSS 1.13.0 available Message-ID: <200105241817.TAA19754@bromine.hgmp.mrc.ac.uk> Several pre-2.0.0 library changes and application alterations plus a selection of bugfixes (e.g. prophet) and installation fixes (html files now install correctly). SHOWALIGN: multiple alignment display program. EMBOSSVERSION: reports the version of emboss being used. Note that the emboss.default file has been deleted from the acd directory and now appears as emboss.default.template in the applications directory. Alan From ableasby at hgmp.mrc.ac.uk Fri May 25 12:31:01 2001 From: ableasby at hgmp.mrc.ac.uk (ableasby at hgmp.mrc.ac.uk) Date: Fri, 25 May 2001 13:31:01 +0100 (BST) Subject: EMBOSS 1.13.1 Message-ID: <200105251231.NAA17288@bromine.hgmp.mrc.ac.uk> This cures an installation problem with 1.13.0 concerning the emboss.default.template file. Apologies for this automake oversight. Alan From luojc at plum.lsc.pku.edu.cn Fri May 25 13:21:16 2001 From: luojc at plum.lsc.pku.edu.cn (Jingchu Luo) Date: Fri, 25 May 2001 21:21:16 +0800 (CST) Subject: EMBOSS 1.13.1 In-Reply-To: <200105251231.NAA17288@bromine.hgmp.mrc.ac.uk> Message-ID: Dear Colleagues, Could I know if there is any public available program for DNA chip design? We plan to pick out fragments (50bp) from arabidopsis cDNAs. The candidate fragment should have less than 30% similarity with other fragments in the genome. Thanks. Jingchu