From gbottu at ben.vub.ac.be Tue Jan 10 06:31:25 2006 From: gbottu at ben.vub.ac.be (Guy Bottu) Date: Tue, 10 Jan 2006 12:31:25 +0100 Subject: [emboss-dev] missing functions ? - Checked by AntiVir DEMO version - Message-ID: <20060110113125.GA10755@bigben.ulb.ac.be> Dear friends, While working on a pogram I noticed that the function ajStrRemoveSetC is documented in the manual (http://emboss.sourceforge.net/developers/ajax/ajstr.html) but is not to be found in tha AJAX libraries of EMBOSS 3.0.0 Is this a case of the code lagging behind the manual, instead of the usual manual lagging behind the code ? :-) Guy Bottu, Belgian EMBnet Node From pmr at ebi.ac.uk Tue Jan 10 07:18:59 2006 From: pmr at ebi.ac.uk (pmr at ebi.ac.uk) Date: Tue, 10 Jan 2006 12:18:59 -0000 (GMT) Subject: [emboss-dev] missing functions ? - Checked by AntiVir DEMO version - In-Reply-To: <20060110113125.GA10755@bigben.ulb.ac.be> References: <20060110113125.GA10755@bigben.ulb.ac.be> Message-ID: <1162.86.137.134.57.1136895539.squirrel@webmail.ebi.ac.uk> Hi Guy, > While working on a pogram I noticed that the function ajStrRemoveSetC is > documented in the manual > (http://emboss.sourceforge.net/developers/ajax/ajstr.html) > but is not to be found in the AJAX libraries of EMBOSS 3.0.0 > > Is this a case of the code lagging behind the manual, instead of the > usual manual lagging behind the code ? :-) The sourceforge pages document what is in CVS. Yes, there are some changes to function names - we are working on a clear system for naming all functions in AJAX, starting with the ajstr.c source file. I intended to announce something before Christmas. We are also working on creating documentation for the last release, ,so there will be parallel developers/ajax trees on the EMBOSS website for the latest release and the latest code in CVS. ajStrRemoveSetC is the new name for a function that exists in release 3.0.0. Old function names will (with very few exceptions) continue to work, but we do need to make sure we retain the 3.0.0 code documentation for folk like yourself using it. I will clean this up later this week. Hope that helps, Peter From dag at sonsorol.org Tue Jan 24 14:51:50 2006 From: dag at sonsorol.org (Chris Dagdigian) Date: Tue, 24 Jan 2006 14:51:50 -0500 Subject: [emboss-dev] heads up for EMBOSS developers: emboss.open-bio.org will be changing IP address Message-ID: Hello, I host the emboss.open-bio.org server along with a couple of other open-bio machines in a colocation cage in a Boston area datacenter. Recently I was given a significant amount of additional IP address space, actually a full Class C block of 254 public IP addresses. The only catch is that in order to get the new space allocation I had to agree to renumber all my existing servers, giving up my current smaller block in favor of the new Class C. What this means for EMBOSS: Not much probably. emboss.open-bio.org is going to have to change to an IP address of: 207.154.17.70 As far as I can tell, emboss.open-bio.org only hosts FTP and mailing lists. If this is true, then I can make the change transparently and people should not notice the transition as I'll keep the old IP active and aliased for as long as it takes DNS to fully propagate. I just wanted to let people know what is happening, especially if there are any hard coded emboss.org DNS entries that point to our open-bio.org hardware. Regards, Chris From gbottu at ben.vub.ac.be Tue Jan 10 11:31:25 2006 From: gbottu at ben.vub.ac.be (Guy Bottu) Date: Tue, 10 Jan 2006 12:31:25 +0100 Subject: [emboss-dev] missing functions ? - Checked by AntiVir DEMO version - Message-ID: <20060110113125.GA10755@bigben.ulb.ac.be> Dear friends, While working on a pogram I noticed that the function ajStrRemoveSetC is documented in the manual (http://emboss.sourceforge.net/developers/ajax/ajstr.html) but is not to be found in tha AJAX libraries of EMBOSS 3.0.0 Is this a case of the code lagging behind the manual, instead of the usual manual lagging behind the code ? :-) Guy Bottu, Belgian EMBnet Node From pmr at ebi.ac.uk Tue Jan 10 12:18:59 2006 From: pmr at ebi.ac.uk (pmr at ebi.ac.uk) Date: Tue, 10 Jan 2006 12:18:59 -0000 (GMT) Subject: [emboss-dev] missing functions ? - Checked by AntiVir DEMO version - In-Reply-To: <20060110113125.GA10755@bigben.ulb.ac.be> References: <20060110113125.GA10755@bigben.ulb.ac.be> Message-ID: <1162.86.137.134.57.1136895539.squirrel@webmail.ebi.ac.uk> Hi Guy, > While working on a pogram I noticed that the function ajStrRemoveSetC is > documented in the manual > (http://emboss.sourceforge.net/developers/ajax/ajstr.html) > but is not to be found in the AJAX libraries of EMBOSS 3.0.0 > > Is this a case of the code lagging behind the manual, instead of the > usual manual lagging behind the code ? :-) The sourceforge pages document what is in CVS. Yes, there are some changes to function names - we are working on a clear system for naming all functions in AJAX, starting with the ajstr.c source file. I intended to announce something before Christmas. We are also working on creating documentation for the last release, ,so there will be parallel developers/ajax trees on the EMBOSS website for the latest release and the latest code in CVS. ajStrRemoveSetC is the new name for a function that exists in release 3.0.0. Old function names will (with very few exceptions) continue to work, but we do need to make sure we retain the 3.0.0 code documentation for folk like yourself using it. I will clean this up later this week. Hope that helps, Peter From dag at sonsorol.org Tue Jan 24 19:51:50 2006 From: dag at sonsorol.org (Chris Dagdigian) Date: Tue, 24 Jan 2006 14:51:50 -0500 Subject: [emboss-dev] heads up for EMBOSS developers: emboss.open-bio.org will be changing IP address Message-ID: Hello, I host the emboss.open-bio.org server along with a couple of other open-bio machines in a colocation cage in a Boston area datacenter. Recently I was given a significant amount of additional IP address space, actually a full Class C block of 254 public IP addresses. The only catch is that in order to get the new space allocation I had to agree to renumber all my existing servers, giving up my current smaller block in favor of the new Class C. What this means for EMBOSS: Not much probably. emboss.open-bio.org is going to have to change to an IP address of: 207.154.17.70 As far as I can tell, emboss.open-bio.org only hosts FTP and mailing lists. If this is true, then I can make the change transparently and people should not notice the transition as I'll keep the old IP active and aliased for as long as it takes DNS to fully propagate. I just wanted to let people know what is happening, especially if there are any hard coded emboss.org DNS entries that point to our open-bio.org hardware. Regards, Chris