From henrikki.almusa at helsinki.fi Tue Aug 5 04:18:39 2003 From: henrikki.almusa at helsinki.fi (Henrikki Almusa) Date: Tue, 5 Aug 2003 11:18:39 +0300 Subject: Silent result update Message-ID: <200308051118.39040.henrikki.almusa@helsinki.fi> Hello, I'm trying to rework the silent result format into emboss report format. I did similar thing (and mailed to emboss-submit) to recoder, which has a similar code as silent. However i have stumbled on something that i cannot understand here. My current version of the patch for silent is attached. The silent causes a segfault for reason i cannot understand. Heres some output from gdb. $ gdb -c core emboss/.libs/lt-silent GNU gdb Red Hat Linux (5.3post-0.20021129.18rh) Copyright 2003 Free Software Foundation, Inc. GDB is free software, covered by the GNU General Public License, and you are welcome to change it and/or distribute copies of it under certain conditions. Type "show copying" to see the conditions. There is absolutely no warranty for GDB. Type "show warranty" for details. This GDB was configured as "i386-redhat-linux-gnu"... Core was generated by `/work/hena/emboss-test/sources/emboss/.libs/lt-silent /work/hena/emboss-2.7.0/m'. Program terminated with signal 11, Segmentation fault. Reading symbols from /work/hena/emboss-test/sources/nucleus/.libs/libnucleus.so.0...done. Loaded symbols for /work/hena/emboss-test/sources/nucleus/.libs/libnucleus.so.0 Reading symbols from /work/hena/emboss-test/sources/ajax/.libs/libajaxg.so.0...done. Loaded symbols for /work/hena/emboss-test/sources/ajax/.libs/libajaxg.so.0 Reading symbols from /work/hena/emboss-test/sources/ajax/.libs/libajax.so.0...done. Loaded symbols for /work/hena/emboss-test/sources/ajax/.libs/libajax.so.0 Reading symbols from /work/hena/emboss-test/sources/plplot/.libs/libplplot.so.5...done. Loaded symbols for /work/hena/emboss-test/sources/plplot/.libs/libplplot.so.5 Reading symbols from /usr/X11R6/lib/libX11.so.6...done. Loaded symbols for /usr/X11R6/lib/libX11.so.6 Reading symbols from /usr/lib/libgd.so.1.8...done. Loaded symbols for /usr/lib/libgd.so.1.8 Reading symbols from /usr/lib/libpng12.so.0...done. Loaded symbols for /usr/lib/libpng12.so.0 Reading symbols from /usr/lib/libz.so.1...done. Loaded symbols for /usr/lib/libz.so.1 Reading symbols from /lib/i686/libm.so.6...done. Loaded symbols for /lib/i686/libm.so.6 Reading symbols from /lib/i686/libc.so.6...done. Loaded symbols for /lib/i686/libc.so.6 Reading symbols from /lib/libdl.so.2...done. Loaded symbols for /lib/libdl.so.2 Reading symbols from /usr/lib/libfreetype.so.6...done. Loaded symbols for /usr/lib/libfreetype.so.6 Reading symbols from /usr/lib/libjpeg.so.62...done. Loaded symbols for /usr/lib/libjpeg.so.62 Reading symbols from /lib/ld-linux.so.2...done. Loaded symbols for /lib/ld-linux.so.2 #0 0x40492490 in _int_free () from /lib/i686/libc.so.6 (gdb) list 107 AjBool allmut; 108 AjBool comp; 109 110 AjPList results1=NULL; /* for forward strand */ 111 AjPList results2=NULL; /* for reverse strand */ 112 AjPList shits; 113 AjPList nshits; 114 115 /*get all user input*/ 116 embInit("silent", argc, argv); (gdb) TIA -- Henrikki Almusa -------------- next part -------------- A non-text attachment was scrubbed... Name: silent.patch Type: text/x-diff Size: 15463 bytes Desc: not available Url : http://lists.open-bio.org/pipermail/emboss-dev/attachments/20030805/ebe206fb/attachment.bin From embos at AOL.COM Thu Aug 14 19:36:40 2003 From: embos at AOL.COM (Jackson Miller) Date: Thu, 14 Aug 2003 23:36:40 GMT Subject: playtime Message-ID: <106090532307@homer> An HTML attachment was scrubbed... URL: http://lists.open-bio.org/pipermail/emboss-dev/attachments/20030814/375693e8/attachment.html From evolution28569daphy85 at yahoo.com Sat Aug 16 08:30:49 2003 From: evolution28569daphy85 at yahoo.com (Bianca) Date: Sat, 16 Aug 2003 05:30:49 -0700 Subject: next weekend ? Message-ID: <20030812771.8184.qmail@yahoo.com> Hi sweetie! I saw your profile online. I am so happy to hear that we are almost neighbours. My name is Bianca, I'am 19 years old and originally I'am comming from Sweden. Maybe you are interested in going out with me? I have a private webcam in my home. The cam is always online when I'am there. Take a look: http://bianca.private-website.com.ar Sometimes the cam is a little bit slow because so many people watching me. Maybe its because I'am nude the most time ;-) It's not a problem for me to show others my nude body..... So take a look: http://bianca.private-website.com.ar Sometimes there is my friend Debbie in front of the cam. What are you doing on saturday evening ? Just contact me..... Yours, Bianca From henrikki.almusa at helsinki.fi Tue Aug 5 08:18:39 2003 From: henrikki.almusa at helsinki.fi (Henrikki Almusa) Date: Tue, 5 Aug 2003 11:18:39 +0300 Subject: Silent result update Message-ID: <200308051118.39040.henrikki.almusa@helsinki.fi> Hello, I'm trying to rework the silent result format into emboss report format. I did similar thing (and mailed to emboss-submit) to recoder, which has a similar code as silent. However i have stumbled on something that i cannot understand here. My current version of the patch for silent is attached. The silent causes a segfault for reason i cannot understand. Heres some output from gdb. $ gdb -c core emboss/.libs/lt-silent GNU gdb Red Hat Linux (5.3post-0.20021129.18rh) Copyright 2003 Free Software Foundation, Inc. GDB is free software, covered by the GNU General Public License, and you are welcome to change it and/or distribute copies of it under certain conditions. Type "show copying" to see the conditions. There is absolutely no warranty for GDB. Type "show warranty" for details. This GDB was configured as "i386-redhat-linux-gnu"... Core was generated by `/work/hena/emboss-test/sources/emboss/.libs/lt-silent /work/hena/emboss-2.7.0/m'. Program terminated with signal 11, Segmentation fault. Reading symbols from /work/hena/emboss-test/sources/nucleus/.libs/libnucleus.so.0...done. Loaded symbols for /work/hena/emboss-test/sources/nucleus/.libs/libnucleus.so.0 Reading symbols from /work/hena/emboss-test/sources/ajax/.libs/libajaxg.so.0...done. Loaded symbols for /work/hena/emboss-test/sources/ajax/.libs/libajaxg.so.0 Reading symbols from /work/hena/emboss-test/sources/ajax/.libs/libajax.so.0...done. Loaded symbols for /work/hena/emboss-test/sources/ajax/.libs/libajax.so.0 Reading symbols from /work/hena/emboss-test/sources/plplot/.libs/libplplot.so.5...done. Loaded symbols for /work/hena/emboss-test/sources/plplot/.libs/libplplot.so.5 Reading symbols from /usr/X11R6/lib/libX11.so.6...done. Loaded symbols for /usr/X11R6/lib/libX11.so.6 Reading symbols from /usr/lib/libgd.so.1.8...done. Loaded symbols for /usr/lib/libgd.so.1.8 Reading symbols from /usr/lib/libpng12.so.0...done. Loaded symbols for /usr/lib/libpng12.so.0 Reading symbols from /usr/lib/libz.so.1...done. Loaded symbols for /usr/lib/libz.so.1 Reading symbols from /lib/i686/libm.so.6...done. Loaded symbols for /lib/i686/libm.so.6 Reading symbols from /lib/i686/libc.so.6...done. Loaded symbols for /lib/i686/libc.so.6 Reading symbols from /lib/libdl.so.2...done. Loaded symbols for /lib/libdl.so.2 Reading symbols from /usr/lib/libfreetype.so.6...done. Loaded symbols for /usr/lib/libfreetype.so.6 Reading symbols from /usr/lib/libjpeg.so.62...done. Loaded symbols for /usr/lib/libjpeg.so.62 Reading symbols from /lib/ld-linux.so.2...done. Loaded symbols for /lib/ld-linux.so.2 #0 0x40492490 in _int_free () from /lib/i686/libc.so.6 (gdb) list 107 AjBool allmut; 108 AjBool comp; 109 110 AjPList results1=NULL; /* for forward strand */ 111 AjPList results2=NULL; /* for reverse strand */ 112 AjPList shits; 113 AjPList nshits; 114 115 /*get all user input*/ 116 embInit("silent", argc, argv); (gdb) TIA -- Henrikki Almusa -------------- next part -------------- A non-text attachment was scrubbed... Name: silent.patch Type: text/x-diff Size: 15463 bytes Desc: not available URL: From embos at AOL.COM Thu Aug 14 23:36:40 2003 From: embos at AOL.COM (Jackson Miller) Date: Thu, 14 Aug 2003 23:36:40 GMT Subject: playtime Message-ID: <106090532307@homer> An HTML attachment was scrubbed... URL: From evolution28569daphy85 at yahoo.com Sat Aug 16 12:30:49 2003 From: evolution28569daphy85 at yahoo.com (Bianca) Date: Sat, 16 Aug 2003 05:30:49 -0700 Subject: next weekend ? Message-ID: <20030812771.8184.qmail@yahoo.com> Hi sweetie! I saw your profile online. I am so happy to hear that we are almost neighbours. My name is Bianca, I'am 19 years old and originally I'am comming from Sweden. Maybe you are interested in going out with me? I have a private webcam in my home. The cam is always online when I'am there. Take a look: http://bianca.private-website.com.ar Sometimes the cam is a little bit slow because so many people watching me. Maybe its because I'am nude the most time ;-) It's not a problem for me to show others my nude body..... So take a look: http://bianca.private-website.com.ar Sometimes there is my friend Debbie in front of the cam. What are you doing on saturday evening ? Just contact me..... Yours, Bianca