From birney at ebi.ac.uk Tue Mar 20 17:55:45 2001 From: birney at ebi.ac.uk (Ewan Birney) Date: Tue, 20 Mar 2001 22:55:45 +0000 (GMT) Subject: BOSC meeting announcement Message-ID: BOSC 2001 (http://www.open-bio.org/bosc2001/) --------------------------------------------- We are pleased to announce that the Bioinformatics Open Source Conference (BOSC2001) is now open for registration. Please see the web site at http://www.open-bio.org/bosc2001/ for complete details. Like last year, BOSC is running as a satellite meeting to ISMB, allowing those traveling to Copenhagen to attend both meetings. KEY DATES: Deadline for BOSC registration June 19, 2001 BOSC2001 July 19-20 ISMB tutorials July 21 ISMB main sessions July 22-25 This year, BOSC will be organized around existing open source bioinformatics projects such as Biojava, Bioperl, Biopython, EMBOSS and others. The mornings will feature presentations drawn from submitted abstracts. During the afternoons there will be a chance for collaborative coding (desktop machines provided courtsey of Sun and there will also be ethernet hubs), and the ability to have small, across-group meetings. The leaders of most of the open source projects are expected to be there and based on previous years we expect a good attendance of open source bioinformaticians. BOSC will be held in parallel with the BioPathways Consortium meeting (see www.biopathways.org for more details). Close cooperation and joint registration will allow attendees to participate in both events. _______________________________________________ Bosc mailing list Bosc at open-bio.org http://open-bio.org/mailman/listinfo/bosc From bauer at genprofile.com Thu Mar 29 05:03:07 2001 From: bauer at genprofile.com (David Bauer) Date: Thu, 29 Mar 2001 12:03:07 +0200 Subject: est2genome Message-ID: <3AC3085B.D0AD99BB@genprofile.com> Hi, just an info for est2genome users. I found est2genome having problems finding very short exons with the default parameters. With the folowing changes it detects also a 14bp exon correctly: mismatch 1 -> 3 intronpenalty 40 -> 20 splicepenalty 20 -> 10 minscore 30 -> 10 David -- Dr. David Bauer GenProfile AG, Max-Delbrueck-Center, Erwin-Negelein-Haus Robert-Roessle-Str. 10, D-13125 Berlin, Germany bauer at genprofile.com, Tel:49-30-94892165, FAX:49-30-94892151 From birney at ebi.ac.uk Tue Mar 20 22:55:45 2001 From: birney at ebi.ac.uk (Ewan Birney) Date: Tue, 20 Mar 2001 22:55:45 +0000 (GMT) Subject: BOSC meeting announcement Message-ID: BOSC 2001 (http://www.open-bio.org/bosc2001/) --------------------------------------------- We are pleased to announce that the Bioinformatics Open Source Conference (BOSC2001) is now open for registration. Please see the web site at http://www.open-bio.org/bosc2001/ for complete details. Like last year, BOSC is running as a satellite meeting to ISMB, allowing those traveling to Copenhagen to attend both meetings. KEY DATES: Deadline for BOSC registration June 19, 2001 BOSC2001 July 19-20 ISMB tutorials July 21 ISMB main sessions July 22-25 This year, BOSC will be organized around existing open source bioinformatics projects such as Biojava, Bioperl, Biopython, EMBOSS and others. The mornings will feature presentations drawn from submitted abstracts. During the afternoons there will be a chance for collaborative coding (desktop machines provided courtsey of Sun and there will also be ethernet hubs), and the ability to have small, across-group meetings. The leaders of most of the open source projects are expected to be there and based on previous years we expect a good attendance of open source bioinformaticians. BOSC will be held in parallel with the BioPathways Consortium meeting (see www.biopathways.org for more details). Close cooperation and joint registration will allow attendees to participate in both events. _______________________________________________ Bosc mailing list Bosc at open-bio.org http://open-bio.org/mailman/listinfo/bosc From bauer at genprofile.com Thu Mar 29 10:03:07 2001 From: bauer at genprofile.com (David Bauer) Date: Thu, 29 Mar 2001 12:03:07 +0200 Subject: est2genome Message-ID: <3AC3085B.D0AD99BB@genprofile.com> Hi, just an info for est2genome users. I found est2genome having problems finding very short exons with the default parameters. With the folowing changes it detects also a 14bp exon correctly: mismatch 1 -> 3 intronpenalty 40 -> 20 splicepenalty 20 -> 10 minscore 30 -> 10 David -- Dr. David Bauer GenProfile AG, Max-Delbrueck-Center, Erwin-Negelein-Haus Robert-Roessle-Str. 10, D-13125 Berlin, Germany bauer at genprofile.com, Tel:49-30-94892165, FAX:49-30-94892151