From gwilliam at hgmp.mrc.ac.uk  Fri Dec  8 05:09:08 2000
From: gwilliam at hgmp.mrc.ac.uk (gwilliam at hgmp.mrc.ac.uk)
Date: Fri, 8 Dec 2000 10:09:08 GMT
Subject: list files as the default output
Message-ID: <200012081009.KAA20206@tellurium.hgmp.mrc.ac.uk>

Damien Counsel just had a query where it would have been convenient to have
the result of the fuzzpro program written out as a 'list' file.

I think it should be a general principle that programs that report lists of
sequences should write them with the USA as the first column, using
ajSeqGetUsa().

Comments?

Gary






From gwilliam at hgmp.mrc.ac.uk  Fri Dec  8 10:09:08 2000
From: gwilliam at hgmp.mrc.ac.uk (gwilliam at hgmp.mrc.ac.uk)
Date: Fri, 8 Dec 2000 10:09:08 GMT
Subject: list files as the default output
Message-ID: <200012081009.KAA20206@tellurium.hgmp.mrc.ac.uk>

Damien Counsel just had a query where it would have been convenient to have
the result of the fuzzpro program written out as a 'list' file.

I think it should be a general principle that programs that report lists of
sequences should write them with the USA as the first column, using
ajSeqGetUsa().

Comments?

Gary