From jw12 at sanger.ac.uk Thu Feb 2 04:44:52 2012 From: jw12 at sanger.ac.uk (Jonathan Warren) Date: Thu, 2 Feb 2012 09:44:52 +0000 Subject: [DAS] Only 10 days left to register for DAS Workshop 2012 In-Reply-To: <69FA2B25-F15E-4361-BBAC-E6DC3975F435@sanger.ac.uk> References: <69FA2B25-F15E-4361-BBAC-E6DC3975F435@sanger.ac.uk> Message-ID: Only 10 days left to register for DAS Workshop 2012 DAS is currently being used to share annotations on genomes, protein alignments, structural and interaction information. If you are interested in sharing biological information the DAS workshop below may be of interest to you. Learn of and contribute to current developments in DAS such as: DAS in the cloud, DAS for Genotype Data, DAS searching, DAS for collaborative annotation projects, DAS alternative formats. Registration is open for the 2012 DAS workshop (27-29 February) at the Genome Campus, Hinxton UK. If you are interested in attending, please find out more by going to http://www.ebi.ac.uk/training/onsite/120227_DAS.html and register via the web link at the bottom of the page. This workshop will cater for novice to expert DAS users as each day is optional. Please register early as places will be limited. Registration closes 10 February 2012 - 12:00. If you are interested in giving a 15 minute talk on the second day please email Jonathan Warren using jonathan.warren at sanger.ac.uk Many thanks The Sanger/EBI DAS team. Jonathan Warren Senior Developer and DAS coordinator blog: http://biodasman.wordpress.com/ jw12 at sanger.ac.uk Ext: 2314 Telephone: 01223 492314 -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. From jprocter at compbio.dundee.ac.uk Wed Feb 22 06:08:53 2012 From: jprocter at compbio.dundee.ac.uk (Jim Procter) Date: Wed, 22 Feb 2012 11:08:53 +0000 Subject: [DAS] das developer day topics Message-ID: <4F44CCC5.8010801@compbio.dundee.ac.uk> Hi Jonathan and everyone. I noticed that there are several topics listed on the developer day under 'developments since last meeting' for which there is no proposer (authentication/encryption in proserver is the one that caught my eye). Who is going to talk about those topics ? Jim. From andy.jenkinson at ebi.ac.uk Wed Feb 22 06:32:08 2012 From: andy.jenkinson at ebi.ac.uk (Andy Jenkinson) Date: Wed, 22 Feb 2012 11:32:08 +0000 Subject: [DAS] das developer day topics In-Reply-To: <4F44CCC5.8010801@compbio.dundee.ac.uk> References: <4F44CCC5.8010801@compbio.dundee.ac.uk> Message-ID: Hi Jim, If people are interested in knowing what has been done so far in proserver for auth/encryption I will run through it. In general, I guess these topics may be a bit more interactive than being talks per se, but I have updated the ones I know about. Cheers, Andy On 22 Feb 2012, at 11:08, Jim Procter wrote: > > Hi Jonathan and everyone. > > I noticed that there are several topics listed on the developer day under 'developments since last meeting' for which there is no proposer (authentication/encryption in proserver is the one that caught my eye). > > Who is going to talk about those topics ? > > Jim. > > > _______________________________________________ > DAS mailing list > DAS at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/das From jprocter at compbio.dundee.ac.uk Wed Feb 22 10:03:36 2012 From: jprocter at compbio.dundee.ac.uk (Jim Procter) Date: Wed, 22 Feb 2012 15:03:36 +0000 Subject: [DAS] das developer day topics In-Reply-To: References: <4F44CCC5.8010801@compbio.dundee.ac.uk> Message-ID: <4F4503C8.2030908@compbio.dundee.ac.uk> On 22/02/2012 11:32, Andy Jenkinson wrote: > Hi Jim, > > If people are interested in knowing what has been done so far in proserver for auth/encryption I will run through it. In general, I guess these topics may be a bit more interactive than being talks per se, but I have updated the ones I know about. great :) I've taken a look at what ProServer currently does, and I think that the demo that David Martin, myself and Thomas Down have planned will complement this. After the long running thread from December about auth/das, David did some thinking about graceful service degradation when authentication fails, and client-neutral methods for advertising server authentication mechanisms. At least, that is the plan ;) Jim. From andy.jenkinson at ebi.ac.uk Wed Feb 22 16:00:33 2012 From: andy.jenkinson at ebi.ac.uk (Andy Jenkinson) Date: Wed, 22 Feb 2012 21:00:33 +0000 Subject: [DAS] das developer day topics In-Reply-To: <4F4503C8.2030908@compbio.dundee.ac.uk> References: <4F44CCC5.8010801@compbio.dundee.ac.uk> <4F4503C8.2030908@compbio.dundee.ac.uk> Message-ID: On 22 Feb 2012, at 15:03, Jim Procter wrote: > On 22/02/2012 11:32, Andy Jenkinson wrote: >> Hi Jim, >> >> If people are interested in knowing what has been done so far in proserver for auth/encryption I will run through it. In general, I guess these topics may be a bit more interactive than being talks per se, but I have updated the ones I know about. > great :) I've taken a look at what ProServer currently does, and I think that the demo that David Martin, myself and Thomas Down have planned will complement this. After the long running thread from December about auth/das, David did some thinking about graceful service degradation when authentication fails, and client-neutral methods for advertising server authentication mechanisms. At least, that is the plan ;) > > Jim. OK, for posterity, the ProServer stuff is currently in the dev branch of subversion - there was an authentication framework before, but no HTTP basic/digest and no encryption. From jprocter at compbio.dundee.ac.uk Wed Feb 22 16:38:59 2012 From: jprocter at compbio.dundee.ac.uk (Jim Procter) Date: Wed, 22 Feb 2012 21:38:59 +0000 Subject: [DAS] das developer day topics In-Reply-To: References: <4F44CCC5.8010801@compbio.dundee.ac.uk> <4F4503C8.2030908@compbio.dundee.ac.uk> Message-ID: <4F456073.8030600@compbio.dundee.ac.uk> On 22/02/2012 21:00, Andy Jenkinson wrote: > > > OK, for posterity, the ProServer stuff is currently in the dev branch of subversion - there was an authentication framework before, but no HTTP basic/digest and no encryption. ahah - I didn't look in the dev branch.. great work! (and I see lots of it was done last march :) Jim. From jw12 at sanger.ac.uk Thu Feb 2 09:44:52 2012 From: jw12 at sanger.ac.uk (Jonathan Warren) Date: Thu, 2 Feb 2012 09:44:52 +0000 Subject: [DAS] Only 10 days left to register for DAS Workshop 2012 In-Reply-To: <69FA2B25-F15E-4361-BBAC-E6DC3975F435@sanger.ac.uk> References: <69FA2B25-F15E-4361-BBAC-E6DC3975F435@sanger.ac.uk> Message-ID: Only 10 days left to register for DAS Workshop 2012 DAS is currently being used to share annotations on genomes, protein alignments, structural and interaction information. If you are interested in sharing biological information the DAS workshop below may be of interest to you. Learn of and contribute to current developments in DAS such as: DAS in the cloud, DAS for Genotype Data, DAS searching, DAS for collaborative annotation projects, DAS alternative formats. Registration is open for the 2012 DAS workshop (27-29 February) at the Genome Campus, Hinxton UK. If you are interested in attending, please find out more by going to http://www.ebi.ac.uk/training/onsite/120227_DAS.html and register via the web link at the bottom of the page. This workshop will cater for novice to expert DAS users as each day is optional. Please register early as places will be limited. Registration closes 10 February 2012 - 12:00. If you are interested in giving a 15 minute talk on the second day please email Jonathan Warren using jonathan.warren at sanger.ac.uk Many thanks The Sanger/EBI DAS team. Jonathan Warren Senior Developer and DAS coordinator blog: http://biodasman.wordpress.com/ jw12 at sanger.ac.uk Ext: 2314 Telephone: 01223 492314 -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. From jprocter at compbio.dundee.ac.uk Wed Feb 22 11:08:53 2012 From: jprocter at compbio.dundee.ac.uk (Jim Procter) Date: Wed, 22 Feb 2012 11:08:53 +0000 Subject: [DAS] das developer day topics Message-ID: <4F44CCC5.8010801@compbio.dundee.ac.uk> Hi Jonathan and everyone. I noticed that there are several topics listed on the developer day under 'developments since last meeting' for which there is no proposer (authentication/encryption in proserver is the one that caught my eye). Who is going to talk about those topics ? Jim. From andy.jenkinson at ebi.ac.uk Wed Feb 22 11:32:08 2012 From: andy.jenkinson at ebi.ac.uk (Andy Jenkinson) Date: Wed, 22 Feb 2012 11:32:08 +0000 Subject: [DAS] das developer day topics In-Reply-To: <4F44CCC5.8010801@compbio.dundee.ac.uk> References: <4F44CCC5.8010801@compbio.dundee.ac.uk> Message-ID: Hi Jim, If people are interested in knowing what has been done so far in proserver for auth/encryption I will run through it. In general, I guess these topics may be a bit more interactive than being talks per se, but I have updated the ones I know about. Cheers, Andy On 22 Feb 2012, at 11:08, Jim Procter wrote: > > Hi Jonathan and everyone. > > I noticed that there are several topics listed on the developer day under 'developments since last meeting' for which there is no proposer (authentication/encryption in proserver is the one that caught my eye). > > Who is going to talk about those topics ? > > Jim. > > > _______________________________________________ > DAS mailing list > DAS at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/das From jprocter at compbio.dundee.ac.uk Wed Feb 22 15:03:36 2012 From: jprocter at compbio.dundee.ac.uk (Jim Procter) Date: Wed, 22 Feb 2012 15:03:36 +0000 Subject: [DAS] das developer day topics In-Reply-To: References: <4F44CCC5.8010801@compbio.dundee.ac.uk> Message-ID: <4F4503C8.2030908@compbio.dundee.ac.uk> On 22/02/2012 11:32, Andy Jenkinson wrote: > Hi Jim, > > If people are interested in knowing what has been done so far in proserver for auth/encryption I will run through it. In general, I guess these topics may be a bit more interactive than being talks per se, but I have updated the ones I know about. great :) I've taken a look at what ProServer currently does, and I think that the demo that David Martin, myself and Thomas Down have planned will complement this. After the long running thread from December about auth/das, David did some thinking about graceful service degradation when authentication fails, and client-neutral methods for advertising server authentication mechanisms. At least, that is the plan ;) Jim. From andy.jenkinson at ebi.ac.uk Wed Feb 22 21:00:33 2012 From: andy.jenkinson at ebi.ac.uk (Andy Jenkinson) Date: Wed, 22 Feb 2012 21:00:33 +0000 Subject: [DAS] das developer day topics In-Reply-To: <4F4503C8.2030908@compbio.dundee.ac.uk> References: <4F44CCC5.8010801@compbio.dundee.ac.uk> <4F4503C8.2030908@compbio.dundee.ac.uk> Message-ID: On 22 Feb 2012, at 15:03, Jim Procter wrote: > On 22/02/2012 11:32, Andy Jenkinson wrote: >> Hi Jim, >> >> If people are interested in knowing what has been done so far in proserver for auth/encryption I will run through it. In general, I guess these topics may be a bit more interactive than being talks per se, but I have updated the ones I know about. > great :) I've taken a look at what ProServer currently does, and I think that the demo that David Martin, myself and Thomas Down have planned will complement this. After the long running thread from December about auth/das, David did some thinking about graceful service degradation when authentication fails, and client-neutral methods for advertising server authentication mechanisms. At least, that is the plan ;) > > Jim. OK, for posterity, the ProServer stuff is currently in the dev branch of subversion - there was an authentication framework before, but no HTTP basic/digest and no encryption. From jprocter at compbio.dundee.ac.uk Wed Feb 22 21:38:59 2012 From: jprocter at compbio.dundee.ac.uk (Jim Procter) Date: Wed, 22 Feb 2012 21:38:59 +0000 Subject: [DAS] das developer day topics In-Reply-To: References: <4F44CCC5.8010801@compbio.dundee.ac.uk> <4F4503C8.2030908@compbio.dundee.ac.uk> Message-ID: <4F456073.8030600@compbio.dundee.ac.uk> On 22/02/2012 21:00, Andy Jenkinson wrote: > > > OK, for posterity, the ProServer stuff is currently in the dev branch of subversion - there was an authentication framework before, but no HTTP basic/digest and no encryption. ahah - I didn't look in the dev branch.. great work! (and I see lots of it was done last march :) Jim.