<font size=2 face="sans-serif">Hi Hilmar,</font>
<br>
<br><font size=2 face="sans-serif">Thank you for your reply. I ever tried
to run 'load_itis_taxonomy.pl' to load ITIS taxonomy. But the load_itis_taxonomy.pl
could not work because it needs 'itisMSforTar.sql' to complete the
process. When I run the load_itis_taxonomy.pl, I got error message:</font>
<br>
<br><font size=2 color=blue face="sans-serif">failed to open /itisMSforTar.sql
for reading: No such file or directory </font>
<br>
<br><font size=2 face="sans-serif">I couldn't find itisMSforTar.sql anywhere.
It is neither in BioSQL scripts/sql, nor in ITIS data set. Can you
please advise where I can get itisMSforTar.sql?</font>
<br>
<br><font size=2 face="sans-serif">Thanks,</font>
<br><font size=2 face="sans-serif">MJ Shen</font>
<br>
<br>
<br>
<table width=100%>
<tr valign=top>
<td><font size=1 color=#5f5f5f face="sans-serif">From:</font>
<td><font size=1 face="sans-serif">Hilmar Lapp <hlapp@drycafe.net></font>
<tr valign=top>
<td><font size=1 color=#5f5f5f face="sans-serif">To:</font>
<td><font size=1 face="sans-serif">"Mo_Jun_Shen@bd.com" <Mo_Jun_Shen@bd.com></font>
<tr>
<td valign=top><font size=1 color=#5f5f5f face="sans-serif">Cc:</font>
<td><font size=1 face="sans-serif">"biosql-l@lists.open-bio.org"
<biosql-l@lists.open-bio.org></font>
<tr valign=top>
<td><font size=1 color=#5f5f5f face="sans-serif">Date:</font>
<td><font size=1 face="sans-serif">09/19/2012 02:20 PM</font>
<tr valign=top>
<td><font size=1 color=#5f5f5f face="sans-serif">Subject:</font>
<td><font size=1 face="sans-serif">Re: [BioSQL-l] PhyloDB</font></table>
<br>
<hr noshade>
<br>
<br>
<br><font size=3>MJ,</font>
<br>
<br><font size=3>Apologies for the long time your message was held up in
moderation. Was your question resolved meanwhile? There is a script that
comes with Biosql that loads the ITIS taxonomy (which essentially consists
of 5 trees, one for each "kingdom") into the PhyloDB tables.
This may serve as an example for how to get data into those tables. Does
this answer your question?<br>
<br>
-hilmar</font>
<br>
<br><font size=3>Sent with a tap.</font>
<br><font size=3><br>
On Jul 8, 2012, at 9:06 PM, </font><a href=mailto:Mo_Jun_Shen@bd.com><font size=3 color=blue><u>Mo_Jun_Shen@bd.com</u></font></a><font size=3>
wrote:<br>
</font>
<br><font size=2 face="sans-serif">Dear Sir/Madam,</font><font size=3>
<br>
</font><font size=2 face="sans-serif"><br>
I am very interested in PhyloDB in BioSQL for querying taxonomy. However,
I couldn't find scripts or document to describe how to setup data for phyloDB
after initiating phyloDB . Could you please provide guidance?</font><font size=3><br>
</font><font size=2 face="sans-serif"><br>
Thank you.</font><font size=3> <br>
</font><font size=2 face="sans-serif"><br>
Best Regards,</font><font size=3> </font><font size=2 face="sans-serif"><br>
MJ Shen</font><font size=3><br>
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