[BioSQL-l] multiple species for a sequence
cjfields at uiuc.edu
Sat Mar 1 20:16:24 EST 2008
I'm looking at a bioperl bug I filed a while back that deals with
multiple species in a sequence file, such as found for AJ428955:
ID AJ428955; SV 1; linear; mRNA; STD; VRL; 8027 BP.
DT 09-JUL-2002 (Rel. 72, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 4)
DE Hepatitis GB virus B subgenomic replicon neoRepB
KW core-neo fusion protein; core-neo gene; polyprotein.
OS Hepatitis GB virus B
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae.
OS Encephalomyocarditis virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage;
We could probably add support in bioperl fairly easily (Bio::Seq could
just return an array or the first species object based on context),
but would BioSQL support sequences like this?
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