[BioSQL-l] Re: gene ontology questions (bug)

[Hilmar Lapp]

On Tuesday, June 3, 2003, at 11:51  AM, Marc Colosimo wrote:

> grep 'caspase activity' function.ontology
>        %caspase activity ; GO:0030693

This is wrong. Check out and compare

http://www.godatabase.org/cgi-bin/go.cgi?query=GO:0030693&view=details

versus

http://www.godatabase.org/cgi-bin/go.cgi?query=GO:0004199&view=details

Maybe the former ID has been retired. You might want to bring it to 
GO's attention. It must be in their new end-of-month release or 
something because I downloaded a few days before month's end and 
everything was alright. Everybody can make mistakes ...

>    %caspase activity ; GO:0004199 ; EC:3.4.22.36
>

This is the right one. Delete references to the other GO ID and you 
should be fine.

	-hilmar
-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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