From ngoto at gen-info.osaka-u.ac.jp  Thu Sep 28 01:31:10 2023
From: ngoto at gen-info.osaka-u.ac.jp (Naohisa Goto)
Date: Thu, 28 Sep 2023 14:31:10 +0900
Subject: [BioRuby] BioRuby 2.0.5 released
Message-ID: <8f55b979-d737-7ca9-0133-401f5acd12ee@gen-info.osaka-u.ac.jp>

Hi, all,

We are pleased to announce the release of BioRuby 2.0.5.
This new release includes bug fixes and developmental changes.

The package (gem) is available at RubyGems.org.

https://rubygems.org/gems/bio/versions/2.0.5

Source code is available at GitHub.

https://github.com/bioruby/bioruby/tree/2.0.5

Archive files are also available at bioruby.org:

Tar.gz file: http://bioruby.org/archive/bioruby-2.0.5.tar.gz
Gem file:  http://bioruby.org/archive/gems/bio-2.0.5.gem

You can easily install by using RubyGems.
First, check the version number by using search command:
  % gem search --remote ^bio
and find ?bio (2.0.5)? in the list. Then,
  % sudo gem install bio

Here is a brief summary of bug fixes.

* Bio::UniProtKB: bug fixes for ft and oh methods.
* Bio::Blast::Remote::GenomeNet remote URL changed.
* Bio::PTS1 remote URL is changed to https.

Here is a brief summary about developmental changes.

* GitHub Actions is used for CI (Continuous Integration).
* Stopped using Travis-CI.
* Fix error in Appveyor CI.

It is recommended to use supported Ruby versions:
Ruby 3.2.2, 3.1.4, 3.0.6.

For more information, see RELEASE_NOTES.rdoc and ChangeLog.

Acknowledgments: Thanks to all persons reporting issues and/or
submitting patches.

Hope you enjoy.

-- 
Naohisa Goto
ng at bioruby.org