From luca at cs.ualberta.ca  Sat Feb 12 22:33:33 2005
From: luca at cs.ualberta.ca (Luca Pireddu)
Date: Sat Feb 12 22:29:31 2005
Subject: [BioRuby] dbclass to read pathway tools flat file format
Message-ID: <200502122033.34257.luca@cs.ualberta.ca>

Hello everyone.  I'm wondering whether anyone knows of some publicly-available 
code (possibly in Ruby) to read the pathway tools flat file format (the 
format in which data from the Biocyc and TAIR databases are released).  

Thanks for your help.

Luca
From ktym at hgc.jp  Mon Feb 28 15:13:41 2005
From: ktym at hgc.jp (Toshiaki Katayama)
Date: Mon Feb 28 15:09:27 2005
Subject: [BioRuby] dbclass to read pathway tools flat file format
In-Reply-To: <200502122033.34257.luca@cs.ualberta.ca>
References: <200502122033.34257.luca@cs.ualberta.ca>
Message-ID: <5b8763a69497a631ac52932370ade77a@hgc.jp>

Hello Luca,

I'm sorry to forget to answer this.

As far as I know, there are no project to support BioCyc and TAIR
in Ruby for now.

Regards,
Toshiaki Katayama
--
Human Genome Center, Institute of Medical Science, University of Tokyo
4-6-1 Shirokanedai, Minato-ku, Tokyo 108-0071, Japan
tel://+81-3-5449-5614, fax://+81-3-5449-5434
BioRuby project     http://bioruby.org/~k/
GenomeNet/KEGG      http://www.genome.jp/
Human Genome Center http://www.hgc.jp/


On 2005/02/13, at 12:33, Luca Pireddu wrote:

> Hello everyone.  I'm wondering whether anyone knows of some 
> publicly-available
> code (possibly in Ruby) to read the pathway tools flat file format (the
> format in which data from the Biocyc and TAIR databases are released).
>
> Thanks for your help.
>
> Luca
> _______________________________________________
> BioRuby mailing list
> BioRuby@open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioruby

From Ara.T.Howard at noaa.gov  Mon Feb 28 21:12:25 2005
From: Ara.T.Howard at noaa.gov (Ara.T.Howard)
Date: Mon Feb 28 21:07:53 2005
Subject: [BioRuby] bioruby book chapter
Message-ID: <Pine.LNX.4.60.0502281714110.7409@harp.ngdc.noaa.gov>


hi out there-

i'm putting togther a book on scientific programming with ruby.  i'm looking
for bioruby users that might be interested in contributing ideas, example
code, project descriptions, etc.

i know nothing about bioruby and just want to test the waters: what are people
doing with it?  is it mature enough for average users?  i don't even know
where to start so suggestions are welcome!

kind regards.

-a
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