From m.han at gsf.de  Tue Oct  5 08:06:04 2004
From: m.han at gsf.de (Michael Han)
Date: Tue Oct  5 08:06:20 2004
Subject: [BioRuby] bioruby wiki
Message-ID: <BD885ACC.5E7%m.han@gsf.de>

Hi BioRubys,

our BioRuby Wiki pages are getting hit by some spammers :-(
I started to clean some of the pages by hand, but a rollback function would
be very helpful for this (at least i cannot find one).

Michael Han


From pjotr at pckassa.com  Sun Oct 10 11:01:42 2004
From: pjotr at pckassa.com (Pjotr Prins)
Date: Sun Oct 10 11:00:51 2004
Subject: [BioRuby] bioruby wiki
In-Reply-To: <BD885ACC.5E7%m.han@gsf.de>
References: <BD885ACC.5E7%m.han@gsf.de>
Message-ID: <20041010150142.GA3117@nmi-tm2.xs4all.nl>

I have had similar problems with my Wiki's. Very annoying. The only
solution that work are IP restricting, logins or an extra step when
commiting (for example reading a number from a png). The latter
preventing bots. Shame.

Pj.

On Tue, Oct 05, 2004 at 02:06:04PM +0200, Michael Han wrote:
> Hi BioRubys,
> 
> our BioRuby Wiki pages are getting hit by some spammers :-(
> I started to clean some of the pages by hand, but a rollback function would
> be very helpful for this (at least i cannot find one).
> 
> Michael Han
> 
> 
> _______________________________________________
> BioRuby mailing list
> BioRuby@open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioruby
From pjotr at pckassa.com  Fri Oct 15 10:17:28 2004
From: pjotr at pckassa.com (Pjotr Prins)
Date: Fri Oct 15 10:16:52 2004
Subject: [BioRuby] Wiki problems
Message-ID: <20041015141728.GA28895@nmi-tm2.xs4all.nl>

Dear K.,

Who is in charge of the Wiki? - there is some real issue with a
spammer (see English section).

I suggest you restrict access to fixed IP adresses to whoever requests
them. In Apache you can say:

  <Location /pjwiki>
    <Limit POST PUT>
      Order Allow,Deny
      Allow from 137.224
      Allow from wur.nl
      Allow from wau.nl
      Allow from xs4all.nl
    </Limit>
    <LimitExcept POST PUT>
      Order allow,deny
      Allow from all
      Deny from 61.149.114
      Deny from netvision.net.il
      Deny from 210.3.7
      Deny from 220.184.113
    </LimitExcept>
  </Location>

which allows viewing for all and editing from some. This goes against
the original Wiki spirit, but not much we can do. People can request
access this way.

Pj.
From ktym at hgc.jp  Fri Oct 15 12:37:53 2004
From: ktym at hgc.jp (Toshiaki Katayama)
Date: Fri Oct 15 12:36:59 2004
Subject: [BioRuby] Wiki problems
In-Reply-To: <20041015141728.GA28895@nmi-tm2.xs4all.nl>
References: <20041015141728.GA28895@nmi-tm2.xs4all.nl>
Message-ID: <8FBFD86B-1EC8-11D9-A1B1-000A95CA1390@hgc.jp>

Dear Pjotr,

I'm sorry that I couldn't work on this problem soon and
thank you for maintaining the site.
I'll take the suggested restriction.
Let me know from what address you want to access.
Another possibility is to freeze wiki pages using password.
If you can recover some pages, could you freeze them for the moment?

Regards,
Toshiaki Katayama


On 2004/10/15, at 23:17, Pjotr Prins wrote:

> Dear K.,
>
> Who is in charge of the Wiki? - there is some real issue with a
> spammer (see English section).
>
> I suggest you restrict access to fixed IP adresses to whoever requests
> them. In Apache you can say:
>
>   <Location /pjwiki>
>     <Limit POST PUT>
>       Order Allow,Deny
>       Allow from 137.224
>       Allow from wur.nl
>       Allow from wau.nl
>       Allow from xs4all.nl
>     </Limit>
>     <LimitExcept POST PUT>
>       Order allow,deny
>       Allow from all
>       Deny from 61.149.114
>       Deny from netvision.net.il
>       Deny from 210.3.7
>       Deny from 220.184.113
>     </LimitExcept>
>   </Location>
>
> which allows viewing for all and editing from some. This goes against
> the original Wiki spirit, but not much we can do. People can request
> access this way.
>
> Pj.
> _______________________________________________
> BioRuby mailing list
> BioRuby@open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioruby

From ktym at hgc.jp  Fri Oct 15 12:44:24 2004
From: ktym at hgc.jp (Toshiaki Katayama)
Date: Fri Oct 15 12:43:27 2004
Subject: [BioRuby] Wiki problems
In-Reply-To: <8FBFD86B-1EC8-11D9-A1B1-000A95CA1390@hgc.jp>
References: <20041015141728.GA28895@nmi-tm2.xs4all.nl>
	<8FBFD86B-1EC8-11D9-A1B1-000A95CA1390@hgc.jp>
Message-ID: <7878C02E-1EC9-11D9-A1B1-000A95CA1390@hgc.jp>

Good news:

I have just remembered that the wiki pages is controlled under CVS. :)
So, I'll revert all pages during this weekend and then will apply
some restriction for the spam.

-k


On 2004/10/16, at 1:37, Toshiaki Katayama wrote:

> Dear Pjotr,
>
> I'm sorry that I couldn't work on this problem soon and
> thank you for maintaining the site.
> I'll take the suggested restriction.
> Let me know from what address you want to access.
> Another possibility is to freeze wiki pages using password.
> If you can recover some pages, could you freeze them for the moment?
>
> Regards,
> Toshiaki Katayama
>
>
> On 2004/10/15, at 23:17, Pjotr Prins wrote:
>
>> Dear K.,
>>
>> Who is in charge of the Wiki? - there is some real issue with a
>> spammer (see English section).
>>
>> I suggest you restrict access to fixed IP adresses to whoever requests
>> them. In Apache you can say:
>>
>>   <Location /pjwiki>
>>     <Limit POST PUT>
>>       Order Allow,Deny
>>       Allow from 137.224
>>       Allow from wur.nl
>>       Allow from wau.nl
>>       Allow from xs4all.nl
>>     </Limit>
>>     <LimitExcept POST PUT>
>>       Order allow,deny
>>       Allow from all
>>       Deny from 61.149.114
>>       Deny from netvision.net.il
>>       Deny from 210.3.7
>>       Deny from 220.184.113
>>     </LimitExcept>
>>   </Location>
>>
>> which allows viewing for all and editing from some. This goes against
>> the original Wiki spirit, but not much we can do. People can request
>> access this way.
>>
>> Pj.
>> _______________________________________________
>> BioRuby mailing list
>> BioRuby@open-bio.org
>> http://portal.open-bio.org/mailman/listinfo/bioruby
>
> _______________________________________________
> BioRuby mailing list
> BioRuby@open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioruby

From pjotr at pckassa.com  Fri Oct 15 17:12:12 2004
From: pjotr at pckassa.com (Pjotr Prins)
Date: Fri Oct 15 17:11:21 2004
Subject: [BioRuby] Wiki problems
In-Reply-To: <8FBFD86B-1EC8-11D9-A1B1-000A95CA1390@hgc.jp>
References: <20041015141728.GA28895@nmi-tm2.xs4all.nl>
	<8FBFD86B-1EC8-11D9-A1B1-000A95CA1390@hgc.jp>
Message-ID: <20041015211212.GB30155@nmi-tm2.xs4all.nl>

On Sat, Oct 16, 2004 at 01:37:53AM +0900, Toshiaki Katayama wrote:
> Dear Pjotr,
> 
> I'm sorry that I couldn't work on this problem soon and
> thank you for maintaining the site.

I think Michael Han did most of the reversions... Thanks Michael,
sorry we are not too responsive sometimes.

Pj.


From pjotr at pckassa.com  Fri Oct 15 17:14:10 2004
From: pjotr at pckassa.com (Pjotr Prins)
Date: Fri Oct 15 17:13:07 2004
Subject: [BioRuby] Fwd: BOSC 2004 Announcement and Call for Papers
In-Reply-To: <FCD18ED5-7D3A-11D8-8E2D-000A95AE7AB4@hgc.jp>
References: <1F799BB8-6D74-11D8-B4B6-000A95CD9782@hgc.jp>
	<20040321133137.GA26257@team-machine.donck.com>
	<20040322182051.GA10462@team-machine.donck.com>
	<FCD18ED5-7D3A-11D8-8E2D-000A95AE7AB4@hgc.jp>
Message-ID: <20041015211410.GA30184@nmi-tm2.xs4all.nl>

Did anyone attend BOSC? Can we have an update - was there interest in
BioRuby?

I am sorry I did not attend - I had to prioritise things and drop it
:-(.

Pj.
From ktym at hgc.jp  Mon Oct 25 00:23:19 2004
From: ktym at hgc.jp (Toshiaki Katayama)
Date: Mon Oct 25 00:22:02 2004
Subject: [BioRuby] Wiki problems
In-Reply-To: <7878C02E-1EC9-11D9-A1B1-000A95CA1390@hgc.jp>
References: <20041015141728.GA28895@nmi-tm2.xs4all.nl>
	<8FBFD86B-1EC8-11D9-A1B1-000A95CA1390@hgc.jp>
	<7878C02E-1EC9-11D9-A1B1-000A95CA1390@hgc.jp>
Message-ID: <99531212-263D-11D9-B044-000A95CA1390@hgc.jp>

Hi all,

Done. Sorry for the delay.
I also thank to Michael Han for the previous reversions.

I recovered the contents of the BioRuby's English wiki site
as of Oct 3rd and the Japanese site as of Sep 1st.

I also applied some restrictions for posting.
Please use user: bioruby and pass: wiki to edit the site.

Thanks,
Toshiaki Katayama

On 2004/10/16, at 1:44, Toshiaki Katayama wrote:

> Good news:
>
> I have just remembered that the wiki pages is controlled under CVS. :)
> So, I'll revert all pages during this weekend and then will apply
> some restriction for the spam.
>
> -k
>
>
> On 2004/10/16, at 1:37, Toshiaki Katayama wrote:
>
>> Dear Pjotr,
>>
>> I'm sorry that I couldn't work on this problem soon and
>> thank you for maintaining the site.
>> I'll take the suggested restriction.
>> Let me know from what address you want to access.
>> Another possibility is to freeze wiki pages using password.
>> If you can recover some pages, could you freeze them for the moment?
>>
>> Regards,
>> Toshiaki Katayama
>>
>>
>> On 2004/10/15, at 23:17, Pjotr Prins wrote:
>>
>>> Dear K.,
>>>
>>> Who is in charge of the Wiki? - there is some real issue with a
>>> spammer (see English section).
>>>
>>> I suggest you restrict access to fixed IP adresses to whoever 
>>> requests
>>> them. In Apache you can say:
>>>
>>>   <Location /pjwiki>
>>>     <Limit POST PUT>
>>>       Order Allow,Deny
>>>       Allow from 137.224
>>>       Allow from wur.nl
>>>       Allow from wau.nl
>>>       Allow from xs4all.nl
>>>     </Limit>
>>>     <LimitExcept POST PUT>
>>>       Order allow,deny
>>>       Allow from all
>>>       Deny from 61.149.114
>>>       Deny from netvision.net.il
>>>       Deny from 210.3.7
>>>       Deny from 220.184.113
>>>     </LimitExcept>
>>>   </Location>
>>>
>>> which allows viewing for all and editing from some. This goes against
>>> the original Wiki spirit, but not much we can do. People can request
>>> access this way.
>>>
>>> Pj.
>>> _______________________________________________
>>> BioRuby mailing list
>>> BioRuby@open-bio.org
>>> http://portal.open-bio.org/mailman/listinfo/bioruby
>>
>> _______________________________________________
>> BioRuby mailing list
>> BioRuby@open-bio.org
>> http://portal.open-bio.org/mailman/listinfo/bioruby
>
> _______________________________________________
> BioRuby mailing list
> BioRuby@open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioruby

From ktym at hgc.jp  Mon Oct 25 01:48:10 2004
From: ktym at hgc.jp (Toshiaki Katayama)
Date: Mon Oct 25 01:46:56 2004
Subject: [BioRuby] Fwd: BOSC 2004 Announcement and Call for Papers
In-Reply-To: <20041015211410.GA30184@nmi-tm2.xs4all.nl>
References: <1F799BB8-6D74-11D8-B4B6-000A95CD9782@hgc.jp>
	<20040321133137.GA26257@team-machine.donck.com>
	<20040322182051.GA10462@team-machine.donck.com>
	<FCD18ED5-7D3A-11D8-8E2D-000A95AE7AB4@hgc.jp>
	<20041015211410.GA30184@nmi-tm2.xs4all.nl>
Message-ID: <73F3CC8C-2649-11D9-B044-000A95CA1390@hgc.jp>

On 2004/10/16, at 6:14, Pjotr Prins wrote:
> Did anyone attend BOSC? Can we have an update - was there interest in
> BioRuby?

I think it was a largest BOSC than ever, there were
a limited number of attendees from the BioRuby community.

At the BOSC site, Darin London have put my slides among others:
   http://www.open-bio.org/bosc2004/
   http://www.open-bio.org/bosc2004/presentations/toshiakiBioRubi.pdf
(File name should be fixed...)

Regards,
Toshiaki Katayama