From k at dev.open-bio.org Sat Sep 1 03:36:41 2007 From: k at dev.open-bio.org (Katayama Toshiaki) Date: Sat, 01 Sep 2007 07:36:41 +0000 Subject: [BioRuby-cvs] bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby bioruby_generator.rb, 1.5, 1.6 Message-ID: <200709010736.l817af87003929@dev.open-bio.org> Update of /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby In directory dev.open-bio.org:/tmp/cvs-serv3923 Modified Files: bioruby_generator.rb Log Message: * remove the image on the background in console Index: bioruby_generator.rb =================================================================== RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/bioruby_generator.rb,v retrieving revision 1.5 retrieving revision 1.6 diff -C2 -d -r1.5 -r1.6 *** bioruby_generator.rb 9 Jul 2007 11:46:00 -0000 1.5 --- bioruby_generator.rb 1 Sep 2007 07:36:38 -0000 1.6 *************** *** 22,26 **** m.file 'bioruby-link.gif', 'public/images/bioruby-link.gif' m.file 'bioruby-bg.gif', 'public/images/bioruby-bg.gif' - m.file 'bioruby-console.png', 'public/images/bioruby-console.png' m.file 'bioruby.css', 'public/stylesheets/bioruby.css' end --- 22,25 ---- From k at dev.open-bio.org Sat Sep 1 03:36:41 2007 From: k at dev.open-bio.org (Katayama Toshiaki) Date: Sat, 01 Sep 2007 07:36:41 +0000 Subject: [BioRuby-cvs] bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates bioruby.css, 1.6, 1.7 bioruby-console.png, 1.1, NONE Message-ID: <200709010736.l817afxI003932@dev.open-bio.org> Update of /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates In directory dev.open-bio.org:/tmp/cvs-serv3923/templates Modified Files: bioruby.css Removed Files: bioruby-console.png Log Message: * remove the image on the background in console --- bioruby-console.png DELETED --- Index: bioruby.css =================================================================== RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby.css,v retrieving revision 1.6 retrieving revision 1.7 diff -C2 -d -r1.6 -r1.7 *** bioruby.css 9 Jul 2007 11:46:00 -0000 1.6 --- bioruby.css 1 Sep 2007 07:36:39 -0000 1.7 *************** *** 336,340 **** textarea { - background: url("/images/bioruby-console.png") no-repeat center; background-color: #eaedeb; font-family: monospace; --- 336,339 ---- From k at dev.open-bio.org Sat Sep 15 10:49:43 2007 From: k at dev.open-bio.org (Katayama Toshiaki) Date: Sat, 15 Sep 2007 14:49:43 +0000 Subject: [BioRuby-cvs] bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby bioruby_generator.rb, 1.6, 1.7 Message-ID: <200709151449.l8FEnhFd024616@dev.open-bio.org> Update of /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby In directory dev.open-bio.org:/tmp/cvs-serv24610 Modified Files: bioruby_generator.rb Log Message: * added spinner during evaluation Index: bioruby_generator.rb =================================================================== RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/bioruby_generator.rb,v retrieving revision 1.6 retrieving revision 1.7 diff -C2 -d -r1.6 -r1.7 *** bioruby_generator.rb 1 Sep 2007 07:36:38 -0000 1.6 --- bioruby_generator.rb 15 Sep 2007 14:49:41 -0000 1.7 *************** *** 23,26 **** --- 23,27 ---- m.file 'bioruby-bg.gif', 'public/images/bioruby-bg.gif' m.file 'bioruby.css', 'public/stylesheets/bioruby.css' + m.file 'spinner.gif', 'public/images/spinner.gif' end end From k at dev.open-bio.org Sat Sep 15 10:49:43 2007 From: k at dev.open-bio.org (Katayama Toshiaki) Date: Sat, 15 Sep 2007 14:49:43 +0000 Subject: [BioRuby-cvs] bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates spinner.gif, NONE, 1.1 bioruby.css, 1.7, 1.8 index.rhtml, 1.4, 1.5 Message-ID: <200709151449.l8FEnhg6024619@dev.open-bio.org> Update of /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates In directory dev.open-bio.org:/tmp/cvs-serv24610/templates Modified Files: bioruby.css index.rhtml Added Files: spinner.gif Log Message: * added spinner during evaluation Index: index.rhtml =================================================================== RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/index.rhtml,v retrieving revision 1.4 retrieving revision 1.5 diff -C2 -d -r1.4 -r1.5 *** index.rhtml 9 Jul 2007 11:14:29 -0000 1.4 --- index.rhtml 15 Sep 2007 14:49:41 -0000 1.5 *************** *** 3,8 ****

<%= flash[:notice] %>


<%- end -%> ! <%= form_remote_tag(:url => {:action => "evaluate"}, :position => "top") %> BioRuby script:
--- 3,12 ----

<%= flash[:notice] %>


<%- end -%> ! <%= form_remote_tag :url => {:action => "evaluate"}, :position => "top", ! :before => %(Element.show('spinner')), ! :success => %(Element.hide('spinner')) %> ! BioRuby script: +

--- NEW FILE: spinner.gif --- (This appears to be a binary file; contents omitted.) Index: bioruby.css =================================================================== RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby.css,v retrieving revision 1.7 retrieving revision 1.8 diff -C2 -d -r1.7 -r1.8 *** bioruby.css 1 Sep 2007 07:36:39 -0000 1.7 --- bioruby.css 15 Sep 2007 14:49:41 -0000 1.8 *************** *** 170,173 **** --- 170,178 ---- div#side img { padding: 5px; + /* centering */ + display: block; + margin-left: auto; + margin-right: auto; + border: 0px; } *************** *** 199,207 **** img { - /* centering */ - display: block; - margin-left: auto; - margin-right: auto; - border: 0px; } --- 204,207 ---- From k at dev.open-bio.org Sun Sep 16 20:01:13 2007 From: k at dev.open-bio.org (Katayama Toshiaki) Date: Mon, 17 Sep 2007 00:01:13 +0000 Subject: [BioRuby-cvs] bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby bioruby_generator.rb, 1.7, 1.8 Message-ID: <200709170001.l8H01DEh030916@dev.open-bio.org> Update of /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby In directory dev.open-bio.org:/tmp/cvs-serv30908 Modified Files: bioruby_generator.rb Log Message: * /images/* are moved under the /images/bioruby/ directory to separate namespaces. Index: bioruby_generator.rb =================================================================== RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/bioruby_generator.rb,v retrieving revision 1.7 retrieving revision 1.8 diff -C2 -d -r1.7 -r1.8 *** bioruby_generator.rb 15 Sep 2007 14:49:41 -0000 1.7 --- bioruby_generator.rb 17 Sep 2007 00:01:10 -0000 1.8 *************** *** 6,10 **** m.directory 'app/views/bioruby' m.directory 'app/views/layouts' ! m.directory 'public/images' m.directory 'public/stylesheets' m.file 'bioruby_controller.rb', 'app/controllers/bioruby_controller.rb' --- 6,10 ---- m.directory 'app/views/bioruby' m.directory 'app/views/layouts' ! m.directory 'public/images/bioruby' m.directory 'public/stylesheets' m.file 'bioruby_controller.rb', 'app/controllers/bioruby_controller.rb' *************** *** 19,27 **** m.file 'index.rhtml', 'app/views/bioruby/index.rhtml' m.file 'bioruby.rhtml', 'app/views/layouts/bioruby.rhtml' ! m.file 'bioruby-gem.png', 'public/images/bioruby-gem.png' ! m.file 'bioruby-link.gif', 'public/images/bioruby-link.gif' ! m.file 'bioruby-bg.gif', 'public/images/bioruby-bg.gif' m.file 'bioruby.css', 'public/stylesheets/bioruby.css' - m.file 'spinner.gif', 'public/images/spinner.gif' end end --- 19,27 ---- m.file 'index.rhtml', 'app/views/bioruby/index.rhtml' m.file 'bioruby.rhtml', 'app/views/layouts/bioruby.rhtml' ! m.file 'spinner.gif', 'public/images/bioruby/spinner.gif' ! m.file 'bioruby-gem.png', 'public/images/bioruby/gem.png' ! m.file 'bioruby-link.gif', 'public/images/bioruby/link.gif' ! m.file 'bioruby-bg.gif', 'public/images/bioruby/bg.gif' m.file 'bioruby.css', 'public/stylesheets/bioruby.css' end end From k at dev.open-bio.org Sun Sep 16 20:01:13 2007 From: k at dev.open-bio.org (Katayama Toshiaki) Date: Mon, 17 Sep 2007 00:01:13 +0000 Subject: [BioRuby-cvs] bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates bioruby.css, 1.8, 1.9 bioruby.rhtml, 1.5, 1.6 index.rhtml, 1.5, 1.6 Message-ID: <200709170001.l8H01DJP030919@dev.open-bio.org> Update of /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates In directory dev.open-bio.org:/tmp/cvs-serv30908/templates Modified Files: bioruby.css bioruby.rhtml index.rhtml Log Message: * /images/* are moved under the /images/bioruby/ directory to separate namespaces. Index: index.rhtml =================================================================== RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/index.rhtml,v retrieving revision 1.5 retrieving revision 1.6 diff -C2 -d -r1.5 -r1.6 *** index.rhtml 15 Sep 2007 14:49:41 -0000 1.5 --- index.rhtml 17 Sep 2007 00:01:11 -0000 1.6 *************** *** 5,10 **** <%= form_remote_tag :url => {:action => "evaluate"}, :position => "top", :before => %(Element.show('spinner')), ! :success => %(Element.hide('spinner')) %> ! BioRuby script:
--- 5,10 ---- <%= form_remote_tag :url => {:action => "evaluate"}, :position => "top", :before => %(Element.show('spinner')), ! :complete => %(Element.hide('spinner')) %> ! BioRuby script:
Index: bioruby.rhtml =================================================================== RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby.rhtml,v retrieving revision 1.5 retrieving revision 1.6 diff -C2 -d -r1.5 -r1.6 *** bioruby.rhtml 9 Jul 2007 11:46:00 -0000 1.5 --- bioruby.rhtml 17 Sep 2007 00:01:11 -0000 1.6 *************** *** 29,33 ****
! --- 29,33 ----
! Index: bioruby.css =================================================================== RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby.css,v retrieving revision 1.8 retrieving revision 1.9 diff -C2 -d -r1.8 -r1.9 *** bioruby.css 15 Sep 2007 14:49:41 -0000 1.8 --- bioruby.css 17 Sep 2007 00:01:11 -0000 1.9 *************** *** 4,8 **** margin: 0; color: #555555; ! background: url("/images/bioruby-bg.gif") repeat-y center; font-family: "trebuchet ms", verdana, arial, helvetica, sans-serif; font-size: 12px; --- 4,8 ---- margin: 0; color: #555555; ! background: url("/images/bioruby/bg.gif") repeat-y center; font-family: "trebuchet ms", verdana, arial, helvetica, sans-serif; font-size: 12px; *************** *** 23,27 **** margin-bottom: 20px; text-align: left; ! background: url("/images/bioruby-gem.png") no-repeat left bottom; } --- 23,27 ---- margin-bottom: 20px; text-align: left; ! background: url("/images/bioruby/gem.png") no-repeat left bottom; } From k at dev.open-bio.org Sun Sep 16 20:55:20 2007 From: k at dev.open-bio.org (Katayama Toshiaki) Date: Mon, 17 Sep 2007 00:55:20 +0000 Subject: [BioRuby-cvs] bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates index.rhtml, 1.6, 1.7 Message-ID: <200709170055.l8H0tKiT030996@dev.open-bio.org> Update of /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates In directory dev.open-bio.org:/tmp/cvs-serv30992/templates Modified Files: index.rhtml Log Message: * remove end_form_tag (deprecated) Index: index.rhtml =================================================================== RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/index.rhtml,v retrieving revision 1.6 retrieving revision 1.7 diff -C2 -d -r1.6 -r1.7 *** index.rhtml 17 Sep 2007 00:01:11 -0000 1.6 --- index.rhtml 17 Sep 2007 00:55:18 -0000 1.7 *************** *** 1,25 ****
! <%- if flash[:notice] -%> !

<%= flash[:notice] %>


! <%- end -%> ! <%= form_remote_tag :url => {:action => "evaluate"}, :position => "top", :before => %(Element.show('spinner')), ! :complete => %(Element.hide('spinner')) %> ! ! BioRuby script: !
!
! ! !    ! Show [ ! <%= link_to_remote "All", :url => {:action => "results", :limit => 0} %> | ! <%= link_to_remote "Last 5", :url => {:action => "results", :limit => 5} %> | ! <%= link_to_remote "Previous", :url => {:action => "results", :limit => 1} %> ! ] or ! <%= link_to "Hide", :action => "index" %> ! results
! <%= end_form_tag %>
--- 1,25 ----
! <%- if flash[:notice] -%> !

<%= flash[:notice] %>


! <%- end -%> ! <% form_remote_tag(:url => {:action => "evaluate"}, :position => "top", :before => %(Element.show('spinner')), ! :complete => %(Element.hide('spinner'))) do %> ! ! BioRuby script: !
! !
! ! !    ! Show [ ! <%= link_to_remote "All", :url => {:action => "results", :limit => 0} %> | ! <%= link_to_remote "Last 5", :url => {:action => "results", :limit => 5} %> | ! <%= link_to_remote "Previous", :url => {:action => "results", :limit => 1} %> ! ] or <%= link_to "Hide", :action => "index" %> results
! <% end %>
+