[Biopython] gzip and SeqIo in python3: not working like before

Alan alanwilter at gmail.com
Wed Mar 15 21:25:31 UTC 2017


Please, what do I need to change in this example that works fine in python2
but not in python3:

from __future__ import print_function
import gzip
from Bio import SeqIO
handle = gzip.open("file.fasta.gz", "r")
record = SeqIO.parse(handle, "fasta")
for rr in record:
    print(rr.id)

IndexError: index out of range

Thanks,

Alan
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