[Biopython] Status of GFF3 parser in BioPython?

Chevreux, Bastien bastien.chevreux at dsm.com
Wed Nov 16 15:50:24 UTC 2016


Hi there,

I am wondering about the status of a GFF3 parser in BioPython. According to the BioPython website it is in development and not integrated yet. If I read an entry on BioStars right (https://www.biostars.org/p/2492/), it is like that since at least 6 years. Any news on that?

Background: I am writing a script intended for wider publication, and while I can reasonably expect BioPython to be installed on many current platforms, I want to keep the number of non-standard dependencies low so as not to have unnecessary hurdles for untrained users.

Best,
  Bastien

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DSM Nutritional Products Microbia Inc | Bioinformatics
60 Westview Street | Lexington, MA 02421 | United States
Phone +1 781 259 7613 | Fax +1 781 259 0615


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