[Biopython] Biopython genepop help

Goutham atla goutham.atla at gmail.com
Sun Mar 29 18:42:04 UTC 2015


Hi,

Its less than 10mb for now.

Regards,
Goutham

On Sun, Mar 29, 2015 at 11:54 PM, Tiago Antao <tra at popgen.net> wrote:

> Hi Goutham,
>
> Roughly, what is the size of your genepop files? I ask this because
> there are two record holders: one in-memory for small files (legacy
> stuff) and one with iterators. The in-memory one is slightly easier to
> use.
> With that info it is easier to answer
>
>
> On Sun, 29 Mar 2015 23:39:57 +0530
> Goutham atla <goutham.atla at gmail.com> wrote:
>
> > Dear All,
> >
> > I am trying to use genePop
> > <
> https://github.com/biopython/biopython/blob/master/Bio/PopGen/GenePop/__init__.py
> >
> > module of Biopython. I am trying to create a Record object.
> >
> > I am little bit confused as I did not find any examples on how to use
> > Record class.
> >
> > If I have a file named "test.genepop", how should I create a Record
> > object out of that file ?
> >
> > My ultimate goal is to replace 0000 0000 000 notation to some thing
> > like 9 9 9 to indicate missing data. Is there any simpler way of
> > doing it ?
> >
> >
> > Regards,
>
>


-- 
Goutham Atla
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