[Biopython] pythonic way to generate tree-of-life graphics à la http://itol.embl.de ?

[Denis Puthier]

Perhaps you could give a try at GraphLan which seems to be written in
python.
http://huttenhower.sph.harvard.edu/graphlan
Best

Denis

2015-02-24 15:36 GMT+01:00 Alan <alanwilter at gmail.com>:

> Hi there,
>
> http://itol.embl.de/ is nice but not practical for me anymore.
>
> I am wondering if there are python tools/scripts that could help me to
> achieve similar results.
>
> To start, I basically have 2 sets of taxons: one at phyla level and
> another at species level and I just want a kind of histogram of species per
> phylum as seen in e.g. http://itol.embl.de/shared/awss. Then I will
> extend it for including other data.
>
> Many thanks in advance,
>
> Alan
>
> --
> Alan Wilter SOUSA da SILVA, DSc
> Bioinformatician, UniProt
> European Bioinformatics Institute (EMBL-EBI)
> European Molecular Biology Laboratory
> Wellcome Trust Genome Campus
> Hinxton
> Cambridge CB10 1SD
> United Kingdom
> Tel: +44 (0)1223 494588
>
> _______________________________________________
> Biopython mailing list  -  Biopython at mailman.open-bio.org
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>



-- 
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Denis Puthier
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