[Biopython] Biopython: python setup.py test

[Michiel de Hoon]

I have fixed the typo in github.
Best,
-Michiel.

--------------------------------------------
On Mon, 3/10/14, McCully, Dwayne (NIH/NIAMS) [C] <dmccully at mail.nih.gov> wrote:

 Subject: [Biopython] Biopython: python setup.py test
 To: "'biopython at lists.open-bio.org'" <biopython at lists.open-bio.org>
 Date: Monday, March 10, 2014, 3:14 PM
 
 During the testing of Biopython I get
 the following error.
 Should I be concerned?
 
 Linux 6.5
 Python 2.7.6
 
 Dwayne
 
 
 Bio.Statistics.lowess docstring test ... ok
 Bio.PDB.Polypeptide docstring test ... ok
 Bio.PDB.Selection docstring test ... ok
 ======================================================================
 ERROR: test_read_from_url
 (test_Entrez_online.EntrezOnlineCase)
 Test Entrez.read from URL
 ----------------------------------------------------------------------
 Traceback (most recent call last):
   File "test_Entrez_online.py", line 44, in
 test_read_from_url
     rec = Entrez.read(einfo)
   File
 "/home/dmccully/biopython-1.63/build/lib.linux-x86_64-2.7/Bio/Entrez/__init__.py",
 line 372, in read
     record = handler.read(handle)
   File
 "/home/dmccully/biopython-1.63/build/lib.linux-x86_64-2.7/Bio/Entrez/Parser.py",
 line 187, in read
     self.parser.ParseFile(handle)
   File
 "/home/dmccully/biopython-1.63/build/lib.linux-x86_64-2.7/Bio/Entrez/Parser.py",
 line 529, in externalEntityRefHandler
     raise RuntimeException("Failed to access %s at
 %s" % (filename, url))
 NameError: global name 'RuntimeException' is not defined
 
 ----------------------------------------------------------------------
 Ran 223 tests in 513.473 seconds
 
 FAILED (failures = 1)
 
 
 
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