[Biopython] remote blast against SRA database with biopython

assaf www assafwww at gmail.com
Sun Dec 21 11:09:18 UTC 2014


hi there,
I would like to use remote blast against SRA database
(http://www.ncbi.nlm.nih.gov/sra) with biopython, for specific
experiments

on the NCBI blast it is done from:
https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastn&PAGE_TYPE=BlastSearch&BLAST_SPEC=SRA&DB_GROUP=Exp

do you maybe have and idea whether this can be done with biopython ?
for example with NCBIWWW.qblast() or otherwise ?

thanks a lot
Assaf


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