[Biopython] cosmic data

Steve Bond biologyguy at gmail.com
Sat Apr 19 21:08:17 UTC 2014


Hi Vikram,
I'm not sure if Biopython has a dedicated module, but the cosmic database
is actually quite simple to work with on its own. It's only a single table,
and can be loaded into your favourite SQL server in a snap. What sort of
analysis are you trying to do?
Here's the link to the database download if you don't already have a copy

ftp://ftp.sanger.ac.uk/pub/CGP/cosmic/data_export/CosmicCompleteExportIncFus_v68.tsv.gz

-Steve

On Sat, Apr 19, 2014 at 12:00 PM, <biopython-request at lists.open-bio.org>wrote:
>
>
> Message: 1
> Date: Sat, 19 Apr 2014 10:31:03 -0400
> From: Vikram K <vikthirtyfive at gmail.com>
> Subject: [Biopython] cosmic data
> To: biopython at lists.open-bio.org
> Message-ID:
>         <CABD-8FcYGo_3P07=
> XDfXsfzdN2n27CxX4FwcJQXbG8n+hX1OZA at mail.gmail.com>
> Content-Type: text/plain; charset=UTF-8
>
> Dear Biopython users,
> is there any biopython module which can be used to help analyze cosmic
> data?
>
> Regards
> Vikram
>
>



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