[Biopython] convert to interleaved nexus

Peter Cock p.j.a.cock at googlemail.com
Wed Mar 27 14:28:21 UTC 2013


On Wed, Mar 27, 2013 at 1:58 PM, Cymon Cox <cymon.cox at googlemail.com> wrote:
> On 27 March 2013 13:41, Peter Cock <p.j.a.cock at googlemail.com> wrote:
>>
>> In that case the length based default seems sensible to me - thus far the
>> only reported issue with defaulting to non-interlaced has been MyBayes'
>> limited buffer. Do you want to make this change to Bio/AlignIO/NexusIO.py
>> or should I?
>>
>> Peter
>
> Hi Peter, please go ahead and make the changes.
>
> Regards, C.

Done,
https://github.com/biopython/biopython/commit/38b366a950fd0deaa317bcaa9c11752a67650889

Natassa - if you are happy getting the latest code from github and
reinstalling Biopython from source, it would be great if you could
confirm this solves your issue.

Thanks,

Peter



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