[Biopython] pass a variable to a blast cmd

[Frederico Moraes Ferreira]

I'm sorry for this stupid question.
Best,
Fred

Em 18-06-2013 11:12, Frederico Moraes Ferreira escreveu:
> Hi there,
> Is there a clever way of passing a variable to the blast_cline command 
> like:
>
>  blast_cline = NcbiblastpCommandline((cmd = "blastp", task = 
> "blastp-short",
>                                         query = inf, matrix = "PAM30",
>                                         outfmt = "5", db = "%s",
>                                         remote = True, 
> comp_based_stats = "0",
>                                          out = "blast_out.xml") % 
> database)
>
> or should I have to have one command to each option.
> Best,
> Fred
>
>
>
>
>
>
> _______________________________________________
> Biopython mailing list  -  Biopython at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/biopython
>

-- 
Dr. Frederico Moraes Ferreira
University of Sao Paulo
Heart Institute, School of Medicine
Laboratoy of Immunology
Av. Dr. Enéas de Carvalho Aguiar, 44
05403-900     Sao Paulo - SP
Brasil