[Biopython] Reading large files, Biopython cookbook example

Peter Cock p.j.a.cock at googlemail.com
Mon Jul 15 17:46:19 UTC 2013


On Sun, Jul 14, 2013 at 5:40 PM, Katrina Lexa <klexa at umich.edu> wrote:
> Hi Peter,
>
> My PDB file came from Maestro, so that is the ordering it follows after 9999.

i.e. This software package? http://www.schrodinger.com/productpage/14/12/

Could you contact their support to find out why they are doing this please?

If there are guidelines in the PDB specification for when this field overflows
I missed them, but it is a problem is there are rival hacks in common use
(roll-over/wrap-around versus this semi-hex scheme).

Thanks,

Peter



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