[Biopython] GSoC project application: Representation and manipulation of genomic variants: Some questions

Brad Chapman chapmanb at 50mail.com
Tue Mar 27 10:20:26 UTC 2012


Mic;

> http://code.google.com/p/pysam/downloads/detail?name=pysam-0.5.tar.gz&can=2&q=
> *added vcf parsing*
> What is the difference between pysam's VCF and PyVCF?*

Good point, thanks for mentioning this. pysam's VCF is also worth
exploring as a base for the variant representation. I added links to it
and the other resources on the GSoC project description page.

Thanks,
Brad



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