[Biopython] Is this a valid genbank record?

Lapointe, David David.Lapointe at umassmed.edu
Wed Jan 18 16:13:45 UTC 2012


Those strange joins are where Ca has a "bond" with an AA in the structure, I would imagine.  

   Het             join(bond(127),bond(127),bond(130),bond(130),bond(138),
                     bond(138),bond(139),bond(138))
                     /heterogen="( CA,1000 )"


-----Original Message-----
From: biopython-bounces at lists.open-bio.org [mailto:biopython-bounces at lists.open-bio.org] On Behalf Of Michael Thon
Sent: Wednesday, January 18, 2012 5:15 AM
To: Biopython Mailing List
Subject: [Biopython] Is this a valid genbank record?

Does anyone know if these GenBank records are valid:

http://www.ncbi.nlm.nih.gov/protein/323463153
http://www.ncbi.nlm.nih.gov/protein/93279336

...because biopython raised an exception when trying to parse them.  They have weird feature locations:

     Het             join(bond(127),bond(127),bond(130),bond(130),bond(138),
                     bond(138),bond(139),bond(138))


thanks
Mike


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